Browse Element(s) Details


Os.12733.2.S1_at

Description gb:AK072001.1
DB_XREF= gi:32982024
TID=Os.12733.2
CNT=39
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12733 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094L17, full insert sequence.
FL= gb:AK072001.1 gb:AK104654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1303011/11Auxin-responsive protein IAA8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13000Os.38009.1.S1_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000OsAffx.1258.1.S1_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000Os.38009.2.S1_x_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000Os.38009.2.S1_at9/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13010NANA1+7232814..7233252hypothetical protein
LOC_Os01g13020OsAffx.22080.1.S1_at11/111+7236523..7237759hypothetical protein
LOC_Os01g13024NANA1+7241784..7242805expressed protein
LOC_Os01g13030Os.12733.1.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.2.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.3.S1_x_at10/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030OsAffx.22446.1.S1_x_at4/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13040OsAffx.22079.1.S1_x_at4/111+7256673..7257227expressed protein
LOC_Os01g13040OsAffx.22079.1.S1_at3/111+7256673..7257227expressed protein
LOC_Os01g13050OsAffx.24964.2.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_x_at6/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_x_at5/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_at1/111+7259824..7260645hypothetical protein
LOC_Os01g13060Os.10055.2.S1_at10/111+7262030..7268612Casein kinase I homolog hhp1, putative, expressed
LOC_Os01g13070OsAffx.9884.1.S1_at10/111+7272821..7274774expressed protein
LOC_Os01g13080Os.46916.1.S1_s_at11/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13080Os.46916.1.S1_at5/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0010102biological_processlateral root morphogenesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12733.2.S1_at--1099--8911Chr01:7250174..7250198 (25 bp)
TGCAGGGCAGTTCCTCAAAACCATA
LOC_Os01g13030
Os.12733.2.S1_at--432--1311Chr01:7250314..7250338 (25 bp)
AGATGTACGCTCTATTCGGTTGCAC
LOC_Os01g13030
Os.12733.2.S1_at--885--10611Chr01:7250328..7250352 (25 bp)
TTCGGTTGCACGTGTCTTTGTATGT
LOC_Os01g13030
Os.12733.2.S1_at--69--6931Chr01:7250347..7250371 (25 bp)
GTATGTGTAGTATTTCCATCCATGT
LOC_Os01g13030
Os.12733.2.S1_at--941--2291Chr01:7250372..7250396 (25 bp)
AAATGGTTGGTATGCAGTGCGCTAC
LOC_Os01g13030
Os.12733.2.S1_at--830--1131Chr01:7250387..7250411 (25 bp)
AGTGCGCTACCGCTATTATTGAGCA
LOC_Os01g13030
Os.12733.2.S1_at--900--1991Chr01:7250411..7250435 (25 bp)
ACTCCTACCTATCCTGCAAGTGTTG
LOC_Os01g13030
Os.12733.2.S1_at--741--7391Chr01:7250430..7250454 (25 bp)
GTGTTGTCCTGAAACGTATGTTCCC
LOC_Os01g13030
Os.12733.2.S1_at--1121--6911Chr01:7250445..7250469 (25 bp)
GTATGTTCCCGTCACGTAAGTGTTT
LOC_Os01g13030
Os.12733.2.S1_at--768--671Chr01:7250508..7250532 (25 bp)
ATGACTTCATTTGGAGCACACTTAT
LOC_Os01g13030
Os.12733.2.S1_at--163--3751Chr01:7250556..7250580 (25 bp)
CTCAATCATACATCCCTATTTCGTT
LOC_Os01g13030
Target Sequence 
TGCAGGGCAGTTCCTCAAAACCATAATTTAATAGTTTTACAGGATCACCATATGATCTGTATTACATGGTTTGCTATTCT
GCAAGTAAAAAAAAAAANCTCTTTTAAGACTCTGTTATGTTAGGTTTGCAACATCTCCTAGAGATGTACGCTCTATTCGG
TTGCACGTGTCTTTGTATGTGTAGTATTTCCATCCATGTAAATGGTTGGTATGCAGTGCGCTACCGCTATTATTGAGCAC
TCCTACCTATCCTGCAAGTGTTGTCCTGAAACGTATGTTCCCGTCACGTAAGTGTTTAAATGTTTTTAAGAGGTTCCTGA
AGATGTATTATTTATATGACTTCATTTGGAGCACACTTATGCTAGTTTGTTTTTGCACCACACCTCAATCATACATCCCT
ATTTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12733.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis