Browse Element(s) Details


Os.12760.1.S1_x_at

Description gb:AK063780.1
DB_XREF= gi:32973798
TID=Os.12760.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-D06, full insert sequence.
FL= gb:AK063780.1 gb:AK121577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2452010/11Mitochondrial ribosomal protein L51/S25/CI-B8 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24469Os.55859.1.S1_at10/114+14014193..1401536523 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24478OsAffx.13951.2.S1_s_at11/114+14015791..1401674423 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24478Os.23116.1.A1_s_at11/114+14015791..1401674423 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24478OsAffx.13951.1.S1_at10/114+14015791..1401674423 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24490OsAffx.13951.2.S1_at9/114+14017286..14023712retrotransposon protein, putative, unclassified
LOC_Os04g24500NANA4+14025393..14027259retrotransposon protein, putative, unclassified
LOC_Os04g24510OsAffx.13954.1.S1_at11/114+14031818..14036432Protein kinase domain containing protein, expressed
LOC_Os04g24520Os.12760.2.S1_at11/114+14037914..14043157Mitochondrial ribosomal protein L51/S25/CI-B8 domain containing protein, expressed
LOC_Os04g24520Os.12760.1.S1_x_at10/114+14037914..14043157Mitochondrial ribosomal protein L51/S25/CI-B8 domain containing protein, expressed
LOC_Os04g24530OsAffx.13955.1.S1_x_at11/114+14047915..14050020AMP-binding enzyme family protein, expressed
LOC_Os04g24530OsAffx.13955.1.S1_at11/114+14047915..14050020AMP-binding enzyme family protein, expressed
LOC_Os04g24540NANA4+14053283..14053756hypothetical protein
LOC_Os04g24550OsAffx.26130.1.S1_x_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os04g24550OsAffx.26130.1.S1_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os04g24550Os.25403.1.S1_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016655molecular_functionoxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12760.1.S1_x_at--536--7571Chr04:14043015..14043039 (25 bp)
GGGCGTGAAGGAGATCCGCTTCCTC
LOC_Os04g24520
Os.12760.1.S1_x_at--968--3991Chr04:14038281..14038305 (25 bp)
CGTGCGCTTGGATGGCCTGACAGAA
LOC_Os04g24520
Os.12760.1.S1_x_at--295--9991Chr04:14038185..14038209 (25 bp)
TAGCCAACCTGTTCAGCTTTAATTA
LOC_Os04g24520
Os.12760.1.S1_x_at--264--1851Chr04:14038144..14038168 (25 bp)
ACGCATGCGGAGGTTGTTCTTTCAT
LOC_Os04g24520
Os.12760.1.S1_x_at--663--9791NONE
TAAGCGCCTGATCTTTACAACCTAC
NONE
Os.12760.1.S1_x_at--324--8211Chr04:14038062..14038086 (25 bp)
GGAATGCTACTGTTTTCTCTTGCTC
LOC_Os04g24520
Os.12760.1.S1_x_at--83--9591Chr04:14038045..14038069 (25 bp)
TCTTGCTCTTCGTTACTTCGTATAT
LOC_Os04g24520
Os.12760.1.S1_x_at--603--2051Chr04:14038031..14038055 (25 bp)
ACTTCGTATATTGTCCTCCAGTATG
LOC_Os04g24520
Os.12760.1.S1_x_at--657--8251Chr04:14037994..14038018 (25 bp)
GGCAGCGATTCTATGGTCTATTTTT
LOC_Os04g24520
Os.12760.1.S1_x_at--456--2731Chr04:14037932..14037956 (25 bp)
AAGCACATGTTCTTGATGATTTGTT
LOC_Os04g24520
Os.12760.1.S1_x_at--159--6531Chr04:14037915..14037939 (25 bp)
GATTTGTTTGCTGTTGCATTTCAAC
LOC_Os04g24520
Target Sequence 
GGGCGTGAAGGAGATCCGCTTCCTCTTCTGCCAATCCTCCCCCGCCAGCGCCCCCGCGAGGGAGTTCGTGAAGAAGAACT
ACGGCGACATCAAGGCGCGCAACCCGTCCCTCCCCGTCCTCATCCGCGAGTGCTCCGGCGTCGAGCCCCAGCTGTGGGCG
CGCTACGATATGGGCGTTGAGAGGTGCGTGCGCTTGGATGGCCTGACAGAAGCACAAATTGACAGTAAGCTGGAGGAGCT
TGCCAAGGCTGGGGGGTCGCTTAAACCTAAATAATGTTTGCTTAGCCAACCTGTTCAGCTTTAATTATTTCCAAATAAGA
GAAACGCATGCGGAGGTTGTTCTTTCATATGATCTAAGTACTATGACATGTCAAATTAAGCGCCTGATCTTTACAACCTA
CTGCTAGGAATGCTACTGTTTTCTCTTGCTCTTCGTTACTTCGTATATTGTCCTCCAGTATGTGATGTAAGAATGGCAGC
GATTCTATGGTCTATTTTTTCTGTAACTGGTAAAGACATCAGAAAGAAAAACATATAAGCACATGTTCTTGATGATTTGT
TTGCTGTTGCATTTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12760.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis