Browse Element(s) Details


Os.12767.1.S1_a_at

Description gb:AB110170.1
DB_XREF= gi:32352137
TID=Os.12767.1
CNT=52
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.12767 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for thiamine biosynthetic enzyme, complete cds, clone: 12YPR001.
PROD=thiamine biosynthetic enzyme
FL= gb:AB110170.1 gb:AK099918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3457011/11Thiazole biosynthetic enzyme 1-1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34530NANA7+20702398..20702604hypothetical protein
LOC_Os07g34540OsAffx.28748.1.S1_at10/117+20705661..20707120hypothetical protein
LOC_Os07g34550NANA7+20711674..20715734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34560NANA7+20719250..20719540hypothetical protein
LOC_Os07g34570Os.12767.1.S1_a_at11/117+20722887..20724380Thiazole biosynthetic enzyme 1-1, chloroplast precursor, putative, expressed
LOC_Os07g34570OsAffx.29087.1.S1_x_at1/117+20722887..20724380Thiazole biosynthetic enzyme 1-1, chloroplast precursor, putative, expressed
LOC_Os07g34580Os.9967.2.S1_x_at11/117+20727712..20728562xyloglucan endotransglucosylase/hydrolase protein 8 precursor, putative, expressed
LOC_Os07g34589Os.7945.1.S1_at11/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.7945.1.S1_s_at11/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.11101.1.S1_a_at1/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.24594.1.A1_s_at1/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34598Os.9987.1.S1_at11/117+20737812..20747764Tyrosyl-DNA phosphodiesterase family protein, expressed
LOC_Os07g34610Os.10487.1.S1_at10/117+20747982..20750138Oral cancer overexpressed protein 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006974biological_processresponse to DNA damage stimulus
GO:0009228biological_processthiamin biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12767.1.S1_a_at--781--8271Chr07:20723714..20723738 (25 bp)
GGCATGCGCGCCCTCGACATGAACA
LOC_Os07g34570
Os.12767.1.S1_a_at--265--5871Chr07:20723928..20723952 (25 bp)
GAGCCATGATGATCTCCGGCCAGAA
LOC_Os07g34570
Os.12767.1.S1_a_at--60--4111Chr07:20723988..20724012 (25 bp)
CGAACGCCATCGACGGCACGATCAA
LOC_Os07g34570
Os.12767.1.S1_a_at--1058--1451Chr07:20724156..20724180 (25 bp)
AGAAGATGTGGACTTTCCCCTGTGT
LOC_Os07g34570
Os.12767.1.S1_a_at--142--10771Chr07:20724200..20724224 (25 bp)
TTGATCCCCTTGTTTGTTTTAGCTC
LOC_Os07g34570
Os.12767.1.S1_a_at--862--10451Chr07:20724218..20724242 (25 bp)
TTAGCTCTGGATGTTGATTAGCGTC
LOC_Os07g34570
Os.12767.1.S1_a_at--374--6651Chr07:20724230..20724254 (25 bp)
GTTGATTAGCGTCTTGTTCATAGCA
LOC_Os07g34570
Os.12767.1.S1_a_at--270--3371Chr07:20724265..20724289 (25 bp)
CACCGTGTGTGTGTGCTCTGCTTGC
LOC_Os07g34570
Os.12767.1.S1_a_at--758--9091Chr07:20724278..20724302 (25 bp)
TGCTCTGCTTGCCTGATGAGGGCAA
LOC_Os07g34570
Os.12767.1.S1_a_at--275--1431Chr07:20724302..20724326 (25 bp)
AGAAAACTTCCATGGATCCGTCTCT
LOC_Os07g34570
Os.12767.1.S1_a_at--762--6371Chr07:20724316..20724340 (25 bp)
GATCCGTCTCTCTGGGAGGAATGAA
LOC_Os07g34570
Target Sequence 
GGCATGCGCGCCCTCGACATGAACACCGCCGAGGACGAGATCGTCCGCCTCACCCGCGAGGTCGTCCCCGGCATGATCGT
CACCGGCATGGAGGTCGCCGAGATCGACGGCGCCCCGAGAATGGGCCCGACGTTCGGAGCCATGATGATCTCCGGCCAGA
AGGCGGCGCACCTGGCGCTGAAGGCGCTCGGCCGGCCGAACGCCATCGACGGCACGATCAAGAAGGCGGCGGCGGCGGCG
GCGCACCCGGAGCTGATCCTGGCGTCGAAGGACGACGGCGAGATCGTGGACGCCTGAGCGAATAGAACAGGGTAAAAAAA
AATCCGCAAGACGTGGTGGTGACACGGAGGAGTTGGGGACGAGAAGAAGATGTGGACTTTCCCCTGTGTTTTTTTTTCGG
GATTTGCATTGATCCCCTTGTTTGTTTTAGCTCTGGATGTTGATTAGCGTCTTGTTCATAGCACTTCCACTGCCACCGTG
TGTGTGTGCTCTGCTTGCCTGATGAGGGCAAGAAAACTTCCATGGATCCGTCTCTCTGGGAGGAATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12767.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis