Browse Element(s) Details


Os.12791.1.S1_a_at

Description gb:U57638.1
DB_XREF= gi:4097337
TID=Os.12791.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=19
UG=Os.12791 (NCBI UniGene Cluster)
UG_TITLE=Metallothionein-like protein mRNA, complete cds
DEF=Oryza sativa metallothionein-like protein mRNA, complete cds.
FL= gb:U57638.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g020708/11Metallothionein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02030OsAffx.14496.1.S1_at11/115+568308..569829OB-fold nucleic acid binding domain containing protein
LOC_Os05g02040Os.53618.1.S1_at11/115+571398..575870replication factor-a protein 1 containing protein, expressed
LOC_Os05g02050OsAffx.26687.1.S1_at11/115+577402..577786Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os05g02060Os.10155.1.S1_at11/115+578361..581363amino acid selective channel protein, putative, expressed
LOC_Os05g02070Os.12791.4.S1_x_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_a_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.14153.3.S1_x_at9/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.1.S1_a_at8/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_x_at5/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02080OsAffx.31479.5.S1_x_at11/115+591006..597274hypothetical protein
LOC_Os05g02080OsAffx.9194.2.S1_at3/115+591006..597274hypothetical protein
LOC_Os05g02090OsAffx.31479.1.S1_x_at11/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02090OsAffx.31479.4.S1_x_at9/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02100OsAffx.31422.1.S1_at10/115+604775..605726hypothetical protein
LOC_Os05g02110OsAffx.14499.1.S1_at11/115+607698..610496Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12791.1.S1_a_at--812--3631Chr05:584612..584636 (25 bp)
CTTGCCTTTTGCTCTGACGCCTAAA
LOC_Os05g02070
Os.12791.1.S1_a_at--847--10671Chr05:584613..584637 (25 bp)
TTGCCTTTTGCTCTGACGCCTAAAT
LOC_Os05g02070
Os.12791.1.S1_a_at--442--4311Chr05:584616..584640 (25 bp)
CCTTTTGCTCTGACGCCTAAATAAA
LOC_Os05g02070
Os.12791.1.S1_a_at--1134--3651Chr05:584617..584641 (25 bp)
CTTTTGCTCTGACGCCTAAATAAAA
LOC_Os05g02070
Os.12791.1.S1_a_at--1119--9491Chr05:584755..584779 (25 bp)
TCTCCTCATGCGTGCCAGGCTTCTT
LOC_Os05g02070
Os.12791.1.S1_a_at--700--3811Chr05:584756..584780 (25 bp)
CTCCTCATGCGTGCCAGGCTTCTTA
LOC_Os05g02070
Os.12791.1.S1_a_at--480--9251Chr05:584757..584781 (25 bp)
TCCTCATGCGTGCCAGGCTTCTTAA
LOC_Os05g02070
Os.12791.1.S1_a_at--896--4291Chr05:584758..584782 (25 bp)
CCTCATGCGTGCCAGGCTTCTTAAT
LOC_Os05g02070
Target Sequence 
CTTGCCTTTTGCTCTGACGCCTAAATAAAACCGTCGTCGTCGTTGTCAGTGTGTGCGTGTGTCGATCAATGTTGGATGGA
TCCCTAGCTAGCTTGGATGGATCATCTATCATCATGGTGATCTCATCATGTACTCCTGCTCCATCTCCTCATGCGTGCCA
GGCTTCTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12791.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis