Browse Element(s) Details


Os.12791.2.S1_x_at

Description gb:U77294.1
DB_XREF= gi:1667587
TID=Os.12791.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12791 (NCBI UniGene Cluster)
DEF=Oryza sativa metallothionein-like protein mRNA, complete cds.
PROD=metallothionein-like protein
FL= gb:U77294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g020705/11Metallothionein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02030OsAffx.14496.1.S1_at11/115+568308..569829OB-fold nucleic acid binding domain containing protein
LOC_Os05g02040Os.53618.1.S1_at11/115+571398..575870replication factor-a protein 1 containing protein, expressed
LOC_Os05g02050OsAffx.26687.1.S1_at11/115+577402..577786Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os05g02060Os.10155.1.S1_at11/115+578361..581363amino acid selective channel protein, putative, expressed
LOC_Os05g02070Os.12791.4.S1_x_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_a_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.14153.3.S1_x_at9/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.1.S1_a_at8/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_x_at5/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02080OsAffx.31479.5.S1_x_at11/115+591006..597274hypothetical protein
LOC_Os05g02080OsAffx.9194.2.S1_at3/115+591006..597274hypothetical protein
LOC_Os05g02090OsAffx.31479.1.S1_x_at11/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02090OsAffx.31479.4.S1_x_at9/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02100OsAffx.31422.1.S1_at10/115+604775..605726hypothetical protein
LOC_Os05g02110OsAffx.14499.1.S1_at11/115+607698..610496Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12791.2.S1_x_at--561--2871Chr05:584441..584465 (25 bp)
AAGTGTGGCACCAGCTGCAGCGGCT
LOC_Os05g02070
Os.12791.2.S1_x_at--209--9271Chr05:584477..584501 (25 bp)
TCCTGCAACTGAATCTATCGTCGTC
LOC_Os05g02070
Os.12791.2.S1_x_at--492--6531Chr05:584520..584544 (25 bp)
GATTTATCGTATGGATGCTGCTACT
LOC_Os05g02070
Os.12791.2.S1_x_at--811--3631NONE
CTTGCCTTTTGTTGAGACGCCTAAA
NONE
Os.12791.2.S1_x_at--689--10691NONE
TTGCCTTTTGTTGAGACGCCTAAAT
NONE
Os.12791.2.S1_x_at--266--9651NONE
TCAGTGTGGGCGTGTGTCGATCAAT
NONE
Os.12791.2.S1_x_at--1092--7751NONE
GGTGATCTCATCATGAACTCCTGCT
NONE
Os.12791.2.S1_x_at--31--9111NONE
TGCTCCATCTCATCAGGCGGGCCAG
NONE
Os.12791.2.S1_x_at--815--3551NONE
CATCAGGCGGGCCAGGCTTCTTAAT
NONE
Os.12791.2.S1_x_at--1035--8291Chr05:584772..584796 (25 bp)
GGCTTCTTAATATAATCTACCTCTG
LOC_Os05g02070
Os.12791.2.S1_x_at--775--3111Chr05:584780..584804 (25 bp)
AATATAATCTACCTCTGCTTTCATC
LOC_Os05g02070
Target Sequence 
AAGTGTGGCACCAGCTGCAGCGGCTGCTCCTGCTGCTCCTGCAACTGAATCTATCGTCGTCNTCGCCCGGCTGCATGANG
ATTTATCGTATGGATGCTGCTACTGTCGATCAGANCTTTNNNNNNAGNCNTNANTTNNNTNNNNTNNNNACCCANCTTAT
ATNTAGGCAGGCCTTGCCTTTTGTTGAGACGCCTAAATAAAACCGTCGTTGTCGTTGTCAGTGTGGGCGTGTGTCGATCA
ATGTGGGATGGATCCCTAGCTAGCTGGGATGGATCATCTATCATCATGGTGATCTCATCATGAACTCCTGCTCCATCTCA
TCAGGCGGGCCAGGCTTCTTAATATAATCTACCTCTGCTTTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12791.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis