Browse Element(s) Details

Os.12795.1.S1_at

Description

gb:AK120059.1
DB_XREF= gi:37989682
TID=Os.12795.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.12795 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001E13, full insert sequence.
FL= gb:AK120059.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os11g05930	11/11	CCT motif family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os11g05880	Os.27320.1.S1_at	11/11	11	+	2755667..2760853	exocyst subunit EXO70 family protein, putative, expressed
LOC_Os11g05890	NA	NA	11	+	2764620..2767925	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05900	NA	NA	11	+	2770311..2772910	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05910	Os.47463.1.S1_x_at	6/11	11	+	2773017..2774011	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05910	Os.14491.2.S1_x_at	5/11	11	+	2773017..2774011	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920	OsAffx.10637.3.S1_s_at	10/11	11	+	2775341..2780748	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920	OsAffx.10637.4.S1_s_at	9/11	11	+	2775341..2780748	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920	OsAffx.32056.1.S1_x_at	8/11	11	+	2775341..2780748	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920	OsAffx.10637.1.S1_s_at	5/11	11	+	2775341..2780748	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920	OsAffx.32056.1.S1_at	3/11	11	+	2775341..2780748	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05930	Os.12795.1.S1_at	11/11	11	+	2784900..2789632	CCT motif family protein, expressed
LOC_Os11g05940	OsAffx.7008.1.S1_at	10/11	11	+	2794876..2798125	hypothetical protein
LOC_Os11g05950	Os.55743.1.S1_at	11/11	11	+	2803518..2804262	expressed protein
LOC_Os11g05960	OsAffx.18698.1.S1_at	11/11	11	+	2805561..2805887	hypothetical protein
LOC_Os11g05970	OsAffx.18699.1.S1_at	11/11	11	+	2806826..2808073	pyridine nucleotide-disulphide oxidoreductase family protein, putative
LOC_Os11g05980	Os.53017.1.S1_at	11/11	11	+	2810377..2813120	pentatricopeptide, putative, expressed
LOC_Os11g05990	Os.27753.1.S1_at	11/11	11	+	2813505..2820113	digalactosyldiacylglycerol synthase 1, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0007623	biological_process	circadian rhythm
GO:0009266	biological_process	response to temperature stimulus
GO:0009640	biological_process	photomorphogenesis
GO:0010017	biological_process	red or far red light signaling pathway
GO:0010031	biological_process	circumnutation
GO:0016310	biological_process	phosphorylation
GO:0042752	biological_process	regulation of circadian rhythm
GO:0005634	cellular_component	nucleus
GO:0005739	cellular_component	mitochondrion
GO:0000156	molecular_function	two-component response regulator activity
GO:0005515	molecular_function	protein binding
GO:0030528	molecular_function	transcription regulator activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12795.1.S1_at--794--13	1	Chr11:2788900..2788924 (25 bp)	ATTAACCAGAGTGCTAGCTGTAGCC	LOC_Os11g05930
Os.12795.1.S1_at--911--161	1	Chr11:2788915..2788939 (25 bp)	AGCTGTAGCCAGGATATTCGCAAAG	LOC_Os11g05930
Os.12795.1.S1_at--496--589	1	Chr11:2789013..2789037 (25 bp)	GAGCGGTGTCCAGAACTGCAGTAAT	LOC_Os11g05930
Os.12795.1.S1_at--283--541	1	Chr11:2789068..2789092 (25 bp)	GAAGCTGCCTTGTTGAAATTCCGGA	LOC_Os11g05930
Os.12795.1.S1_at--1076--491	1	Chr11:2789299..2789323 (25 bp)	GCTTGCAGAACAAAGACCCAGGGTT	LOC_Os11g05930
Os.12795.1.S1_at--510--1007	1	Chr11:2789384..2789408 (25 bp)	TAGTGACACCGTTAACTCATACTGT	LOC_Os11g05930
Os.12795.1.S1_at--302--875	1	Chr11:2789406..2789430 (25 bp)	TGTACTTTTGATACTTCCCTTCTCA	LOC_Os11g05930
Os.12795.1.S1_at--980--511	1	Chr11:2789471..2789495 (25 bp)	GCAACAGTTTTCCTTCCGTAGTTAG	LOC_Os11g05930
Os.12795.1.S1_at--1087--677	1	Chr11:2789491..2789515 (25 bp)	GTTAGCCTTTTGTACAAGTGCTCTC	LOC_Os11g05930
Os.12795.1.S1_at--972--285	1	Chr11:2789506..2789530 (25 bp)	AAGTGCTCTCTTCTTTTGTCGGTTG	LOC_Os11g05930
Os.12795.1.S1_at--994--491	1	Chr11:2789538..2789562 (25 bp)	GCTTCCATGCCATACCTTGTAAAGA	LOC_Os11g05930

Target Sequence

ATTAACCAGAGTGCTAGCTGTAGCCAGGATATTCGCAAAGGAAGTGGATGCACTGGGAGCGGTGAAACTGATGCAAATAC
AAATACGGTAATTGCACTAGAAAGTGGCAATGAGAGCGGTGTCCAGAACTGCAGTAATAATGTATTGGATGGTGACCGGT
CTCGCCGTGAAGCTGCCTTGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGGTCAGGTATCATAGC
AGGAAGAAGCTTGCAGAACAAAGACCCAGGGTTAAGGGCCAGTTTGTGAGCCAAAAACTGAAGTCAGCTATAACAACAGA
GGCAGAAACTGACTAGTGACACCGTTAACTCATACTGTACTTTTGATACTTCCCTTCTCAGCGAAGGGCATTCGAAGTAA
CCCGTGTAAGTTAAAGGCTGGCAACAGTTTTCCTTCCGTAGTTAGCCTTTTGTACAAGTGCTCTCTTCTTTTGTCGGTTG
TTTATTGGCTTCCATGCCATACCTTGTAAAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis