Browse Element(s) Details


Os.12803.1.S1_at

Description gb:AK112003.1
DB_XREF= gi:37988666
TID=Os.12803.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-035-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F01, full insert sequence.
FL= gb:AK112003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g089607/11Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08910OsAffx.4280.2.S1_at11/115+4912587..4913066expressed protein
LOC_Os05g08920NANA5+4914982..4915467late embryogenesis abundant protein, putative, expressed
LOC_Os05g08930Os.53159.1.S1_s_at11/115+4916342..4918945chloroplast lumen common family protein, putative, expressed
LOC_Os05g08940NANA5+4920612..4924553transposon protein, putative, Mariner sub-class
LOC_Os05g08950OsAffx.14604.1.S1_x_at10/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08950OsAffx.14604.1.S1_at8/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08960Os.12803.1.S1_s_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.46302.1.S1_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.12803.1.S1_at7/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.54503.1.A1_at5/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.5717.1.S1_at1/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08970Os.54219.1.S1_at11/115+4943452..4949049Structure-specific recognition protein 1 homolog, putative, expressed
LOC_Os05g08980Os.10806.1.S1_at11/115+4949582..4954534expressed protein
LOC_Os05g08990Os.12172.1.S1_at11/115+4954769..4959839Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os05g09000Os.23351.1.A1_at11/115+4961618..4964933expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009650biological_processUV protection
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12803.1.S1_at--774--2651Chr05:4939672..4939696 (25 bp)
AAGCCACCTACAGTGCGATTTGTTT
LOC_Os05g08960
Os.12803.1.S1_at--601--4411Chr05:4939674..4939698 (25 bp)
GCCACCTACAGTGCGATTTGTTTCT
LOC_Os05g08960
Os.12803.1.S1_at--354--3371Chr05:4939676..4939700 (25 bp)
CACCTACAGTGCGATTTGTTTCTCG
LOC_Os05g08960
Os.12803.1.S1_at--748--6831NONE
GTTTCATCCTAACATTTATGCTGAT
NONE
Os.12803.1.S1_at--913--3531NONE
CATCCTAACATTTATGCTGATGGGA
NONE
Os.12803.1.S1_at--945--4891Chr05:4941704..4941728 (25 bp)
GCTTAGATATACTACAAAACCAGTG
LOC_Os05g08960
Os.12803.1.S1_at--783--1251Chr05:4941708..4941732 (25 bp)
AGATATACTACAAAACCAGTGGAGC
LOC_Os05g08960
Os.12803.1.S1_at--646--751Chr05:4941743..4941767 (25 bp)
ATGTAGCTGCTATACTCACATCCAT
LOC_Os05g08960
Os.12803.1.S1_at--1075--9991Chr05:4941746..4941770 (25 bp)
TAGCTGCTATACTCACATCCATCCA
LOC_Os05g08960
Os.12803.1.S1_at--194--10191NONE
TATACTCACATCCATCCAGTCGCTG
NONE
Os.12803.1.S1_at--159--2111NONE
ACATCCATCCAGTCGCTGCTTTGCG
NONE
Target Sequence 
AAGCCACCTACAGTGCGATTTGTTTCTCGGATGTTTCATCCTAACATTTATGCTGATGGGAGCATATGCTTAGATATACT
ACAAAACCAGTGGAGCCCCATATATGATGTAGCTGCTATACTCACATCCATCCAGTCGCTGCTTTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis