Browse Element(s) Details


Os.12828.1.S1_at

Description gb:CB621731
DB_XREF= gi:29616719
DB_XREF=OSIIEa07N04.r
CLONE=OSIIEa07N04
TID=Os.12828.1
CNT=29
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.12828 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566280.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1842010/11CHCH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18380Os.16227.1.S1_at11/113+10278002..10284440Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os03g18390OsAffx.25133.1.S1_at11/113+10291300..10292453hypothetical protein
LOC_Os03g18400Os.16408.1.S1_at10/113+10293376..10295855expressed protein
LOC_Os03g18410Os.18198.1.S1_at11/113+10299253..10303829RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
LOC_Os03g18420Os.12828.1.S1_at10/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18420Os.52574.2.S1_x_at1/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18430Os.32994.1.S1_at10/113+10312319..10315974protein kinase family protein, putative, expressed
LOC_Os03g18440Os.7261.1.S1_at11/113+10324018..10334636expressed protein
LOC_Os03g18454Os.22638.1.S1_x_at11/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18454Os.12546.1.S1_at9/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12828.1.S1_at--481--4771NONE
GCTGCGTCTTCGACCTGTTGAAAGA
NONE
Os.12828.1.S1_at--676--2051Chr03:10309069..10309093 (25 bp)
ACTTCACCAGAAGTGCCCCAAGGAG
LOC_Os03g18420
Os.12828.1.S1_at--459--591Chr03:10309104..10309128 (25 bp)
ATGCCGGCTGCATGTATTACTACAC
LOC_Os03g18420
Os.12828.1.S1_at--149--6551Chr03:10309163..10309187 (25 bp)
GATTTTGAGAGTGCATGCCCCGTAT
LOC_Os03g18420
Os.12828.1.S1_at--54--1671Chr03:10309194..10309218 (25 bp)
AGCCTCTCAGGGTTTTACTTCAAAT
LOC_Os03g18420
Os.12828.1.S1_at--800--3511Chr03:10309273..10309297 (25 bp)
CATGTTTGTTGTTGTCCTCACAGAA
LOC_Os03g18420
Os.12828.1.S1_at--1100--10531Chr03:10309301..10309325 (25 bp)
TTCTTTTCGGATGACTAGCACGCCT
LOC_Os03g18420
Os.12828.1.S1_at--180--8231Chr03:10309402..10309426 (25 bp)
GGCAATCTTGTTGTCTTGAGTCAGC
LOC_Os03g18420
Os.12828.1.S1_at--438--10771Chr03:10309417..10309441 (25 bp)
TTGAGTCAGCTGTAGCCCTAAGATA
LOC_Os03g18420
Os.12828.1.S1_at--860--6511Chr03:10309467..10309491 (25 bp)
GATTTGCAACGTTTCATGGAGTCTC
LOC_Os03g18420
Os.12828.1.S1_at--188--7231Chr03:10309523..10309547 (25 bp)
GTCCTCTGGACCTCTAAAACTTTAG
LOC_Os03g18420
Target Sequence 
GCTGCGTCTTCGACCTGTTGAAAGAACTTCACCAGAAGTGCCCCAAGGAGATGGACGCCTATGCCGGCTGCATGTATTAC
TACACCAACGAATTTGACTTCTGTCGTAAGGAGCAGCAAGATTTTGAGAGTGCATGCCCCGTATCTGAGTAGCCTCTCAG
GGTTTTACTTCAAATGAATGATCTTCACAAATAAGGAGAAAAAGCCGACAAACCAAGTTCATGATCTCCCATGTTTGTTG
TTGTCCTCACAGAATTTTTCTTTTCGGATGACTAGCACGCCTCTGAGCTTTTNATCCTGCTTGTCATTATTCTCATGCAA
GATTTTCTCACCAATCAACAACACTGTTTGAGTTGGATGGCAATCTTGTTGTCTTGAGTCAGCTGTAGCCCTAAGATAAG
TTGATCGATGATGTTACTCTTATGATTTGCAACGTTTCATGGAGTCTCATTGTTNNTNACTTGTCTCGCTCTCTCCTTAG
TCCTCTGGACCTCTAAAACTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis