Browse Element(s) Details


Os.12830.1.S1_at

Description gb:AK059441.1
DB_XREF= gi:32969459
TID=Os.12830.1
CNT=48
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H07, full insert sequence.
FL= gb:AK059441.1 gb:AK069326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5592011/11ZIM motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55890OsAffx.22947.1.S1_x_at11/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55890OsAffx.22947.2.S1_x_at3/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55890OsAffx.22947.3.S1_x_at3/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55890OsAffx.22947.5.S1_x_at2/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55899NANA4+33068089..33068301hypothetical protein
LOC_Os04g55910Os.56089.1.S1_at1/114+33070057..33070671transposon protein, putative, unclassified
LOC_Os04g55920Os.12830.1.S1_at11/114+33087397..33091165ZIM motif family protein, expressed
LOC_Os04g55930Os.8192.1.S1_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55930Os.57383.1.S1_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55930Os.38851.1.A1_s_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55940Os.18175.1.S1_at11/114+33095564..33099970Vacuolar cation/proton exchanger 3, putative, expressed
LOC_Os04g55950OsAffx.4187.1.S1_x_at11/114+33106151..33106677expressed protein
LOC_Os04g55950OsAffx.4187.1.S1_at11/114+33106151..33106677expressed protein
LOC_Os04g55960Os.15108.1.S1_at11/114+33110785..33116798NADPH-cytochrome P450 reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12830.1.S1_at--616--4831Chr04:33090167..33090190 (24 bp)
GCTCAATTTGCAAGCTCCAGGCTGA
LOC_Os04g55920
Os.12830.1.S1_at--148--4131Chr04:33090336..33090360 (25 bp)
CGCTTCCTAGAGAAACGCCGTGACA
LOC_Os04g55920
Os.12830.1.S1_at--232--1831Chr04:33090350..33090685 (25 bp)
ACGCCGTGACAGGTTGGTGAGCAAA
LOC_Os04g55920
Os.12830.1.S1_at--394--8911Chr04:33090678..33090702 (25 bp)
TGAGCAAAGCTCCATATCCCACAAA
LOC_Os04g55920
Os.12830.1.S1_at--941--8391Chr04:33090754..33090778 (25 bp)
GGCCCAGTAACTGTCAACTTCGAAT
LOC_Os04g55920
Os.12830.1.S1_at--38--2951Chr04:33090813..33090837 (25 bp)
AAGGCGTCGCGTTCATTGTTTAGAT
LOC_Os04g55920
Os.12830.1.S1_at--604--5791Chr04:33090841..33090865 (25 bp)
GTCGCACCCTAGAACCTTACTAATA
LOC_Os04g55920
Os.12830.1.S1_at--342--1751Chr04:33090871..33090895 (25 bp)
ACCTATGCCCTTATTATCGTTGTAC
LOC_Os04g55920
Os.12830.1.S1_at--637--511Chr04:33090886..33090910 (25 bp)
ATCGTTGTACTGTTCCTTATGTGCT
LOC_Os04g55920
Os.12830.1.S1_at--1038--771Chr04:33090904..33090928 (25 bp)
ATGTGCTAGTCTATTCTGTCATGAA
LOC_Os04g55920
Os.12830.1.S1_at--841--731Chr04:33091001..33091025 (25 bp)
ATGTTATCGTGTTCGTCTAGTAATG
LOC_Os04g55920
Target Sequence 
GCTCAATTTGCAAGCTCCAGGCTGATCTCCCCATTGCCAGGAGGCACTCCCTTCAGCGCTTCCTAGAGAAACGCCGTGAC
AGGTTGGTGAGCAAAGCTCCATATCCCACAAAATCCTCCGAGGGCATGGAAGCATCAGGGATGGAAGTAACTGCTGAGGG
CAAGGCCCAGTAACTGTCAACTTCGAATGGTGGAGGCTGACGTTTGGAGGGGGAAGGAAGGAAAGGCGTCGCGTTCATTG
TTTAGATGGTGTCGCACCCTAGAACCTTACTAATAATCGAACCTATGCCCTTATTATCGTTGTACTGTTCCTTATGTGCT
AGTCTATTCTGTCATGAATTTGTTTACTCGAACAGCAAACTGCTATGATAGTAGTATATCATTGTACATCATGCATATCA
TTGCCTGACAATGTTATCGTGTTCGTCTAGTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis