Browse Element(s) Details


Os.12856.1.S1_x_at

Description gb:AK061570.1
DB_XREF= gi:32971588
TID=Os.12856.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033090F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-F09, full insert sequence.
FL= gb:AK061570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4624011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46190NANA5+26708783..26710129expressed protein
LOC_Os05g46200Os.14570.1.S1_at11/115+26711104..26718236Glycosyl hydrolases family 35 protein, expressed
LOC_Os05g46210Os.54365.1.S1_at11/115+26718390..26722006esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os05g46220Os.49242.1.S1_at11/115+26722589..26725794Mitochondrial carrier protein, expressed
LOC_Os05g46230Os.15241.1.S1_at11/115+26725801..26729200Nucleosome assembly protein containing protein, expressed
LOC_Os05g46240Os.12856.1.S1_x_at11/115+26732360..26735467expressed protein
LOC_Os05g46250Os.53675.1.S1_at11/115+26737462..26740223expressed protein
LOC_Os05g46250OsAffx.15124.1.S1_at9/115+26737462..26740223expressed protein
LOC_Os05g46260Os.8729.1.S1_at11/115+26741375..26745667expressed protein
LOC_Os05g46270Os.4469.1.S1_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.4469.1.S2_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.27414.2.S1_x_at1/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46280Os.51305.1.S1_at11/115+26751145..26752237expressed protein
LOC_Os05g46290Os.22773.1.S1_at11/115+26752405..26757037Chaperonin CPN60-2, mitochondrial precursor, putative, expressed
LOC_Os05g46300OsAffx.4635.1.S1_at11/115+26758153..26759784F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12856.1.S1_x_at--604--791Chr05:26732937..26732961 (25 bp)
ATGTGTGCGCGAGGTCCTACGAGCA
LOC_Os05g46240
Os.12856.1.S1_x_at--167--4071Chr05:26732862..26732886 (25 bp)
CGAGGCGGTTCGAGCACAAGTGCTA
LOC_Os05g46240
Os.12856.1.S1_x_at--285--5951Chr05:26732851..26732875 (25 bp)
GAGCACAAGTGCTACAACCTCTTCA
LOC_Os05g46240
Os.12856.1.S1_x_at--190--10671Chr05:26732632..26732656 (25 bp)
TTCCTCATCAGCATGGCGGCATTCT
LOC_Os05g46240
Os.12856.1.S1_x_at--127--8371Chr05:26732578..26732602 (25 bp)
GGCGTCTACTGCTTCAAGGGCTTGG
LOC_Os05g46240
Os.12856.1.S1_x_at--53--2891Chr05:26732563..26732587 (25 bp)
AAGGGCTTGGTCTGCTGATCGATCT
LOC_Os05g46240
Os.12856.1.S1_x_at--259--4732Chr08:22954453..22954955 (25 bp)
GCTGATCGATCTGAAGGCCATTTTG
NONE
Os.12856.1.S1_x_at--1075--8411Chr05:26732535..26732559 (25 bp)
GGCCATTTTGTTGAAATTCGACCAG
LOC_Os05g46240
Os.12856.1.S1_x_at--1016--4791Chr05:26732505..26732529 (25 bp)
GCATCTTTTTTCAGTTACGCAACGC
LOC_Os05g46240
Os.12856.1.S1_x_at--284--9951Chr05:26732490..26732514 (25 bp)
TACGCAACGCGCACTTTCAGTAAAT
LOC_Os05g46240
Os.12856.1.S1_x_at--305--8751Chr05:26732433..26732457 (25 bp)
TGTACACTTGTAGTCATCTTTGAAG
LOC_Os05g46240
Target Sequence 
ATGTGTGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCGATCTCGTGGGACGACGCGCTGCAGTCCGGCGCGAGG
CGGTTCGAGCACAAGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTA
CGGCGGCTCCGTCGGCTGGAACGTCCTCAACCTGGCCGCCCTCGTGTGGCTGCGCGGCCGGTGGCTGGGCAAGATGGCCG
TCGTCCGGTCGCTCCTCCCCTTCGCCGCCGTGGCCTGCGTCGGCGTCCTCATGGCCGGCTGGTCCTTCCTCATCAGCATG
GCGGCATTCTCCTCCCTCCTCCTCGGCTGGTTCGTCCTCGGCGTCTACTGCTTCAAGGGCTTGGTCTGCTGATCGATCTG
AAGGCCATTTTGTTGAAATTCGACCAGAATATGCATCTTTTTTCAGTTACGCAACGCGCACTTTCAGTAAATTATAGACA
GTTTTTACAGTGAAATCAGAGAGTTGTACACTTGTAGTCATCTTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12856.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis