Browse Element(s) Details


Os.12866.1.S1_at

Description gb:AK070279.1
DB_XREF= gi:32980303
TID=Os.12866.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12866 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050A11, full insert sequence.
FL= gb:AK070279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4836011/11Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48330Os.164.1.S1_at9/112+29581069..29586122Hydroxymethylglutaryl-coenzyme A reductase family protein, expressed
LOC_Os02g48340Os.15114.1.S1_at11/112+29588754..29593032RNA recognition motif family protein, expressed
LOC_Os02g48350Os.53174.1.A1_s_at11/112+29593278..29595956Diacylglycerol acyltransferase family protein, expressed
LOC_Os02g48360Os.12866.1.S1_at11/112+29598590..29604280Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os02g48370Os.54897.1.S1_at11/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48370Os.16957.1.S1_at1/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48380Os.51819.1.S1_at11/112+29612661..29618583expressed protein
LOC_Os02g48390Os.8840.1.S1_at11/112+29619592..29621911Ribose-phosphate pyrophosphokinase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12866.1.S1_at--57--3731Chr02:29599335..29599359 (25 bp)
CTACTGTCGACTTGAAAGGCAAAGC
LOC_Os02g48360
Os.12866.1.S1_at--906--2331Chr02:29599200..29599339 (25 bp)
AAAGCATTCGAGCTATTGAGGAACA
LOC_Os02g48360
Os.12866.1.S1_at--251--9691Chr02:29599089..29599113 (25 bp)
TCACTGTGCGTGGAAGATCAAGACT
LOC_Os02g48360
Os.12866.1.S1_at--236--8271Chr02:29599059..29599083 (25 bp)
GGCAGGATCAAGAAACTCCAGGAAT
LOC_Os02g48360
Os.12866.1.S1_at--575--2351Chr02:29598911..29598935 (25 bp)
AAAGCATCGTGAAGCCTGGGTGCTC
LOC_Os02g48360
Os.12866.1.S1_at--367--8631Chr02:29598895..29598919 (25 bp)
TGGGTGCTCGCAGGATGTTCTCAAG
LOC_Os02g48360
Os.12866.1.S1_at--418--731Chr02:29598881..29598905 (25 bp)
ATGTTCTCAAGGCAGCGCTGAGCGC
LOC_Os02g48360
Os.12866.1.S1_at--969--5871Chr02:29598862..29598886 (25 bp)
GAGCGCTATGTCATCTGTGACCGAG
LOC_Os02g48360
Os.12866.1.S1_at--594--3591Chr02:29598764..29598788 (25 bp)
CATTCGCTTGTGTCATCTGACATGT
LOC_Os02g48360
Os.12866.1.S1_at--39--6011Chr02:29598681..29598705 (25 bp)
GAGAGTTTTGCCATTTTTGAGCCGG
LOC_Os02g48360
Os.12866.1.S1_at--311--9191Chr02:29598673..29598697 (25 bp)
TGCCATTTTTGAGCCGGTAGCGTGA
LOC_Os02g48360
Target Sequence 
CTACTGTCGACTTGAAAGGCAAAGCATTCGAGCTATTGAGGAACAATTCTACCAGCTTCTTAATCGACGACATNTNCAGA
AACCCAGGACCACTCCAATTCGAAGGAGCAGGTGCTGATTCAAAGCCTATTTCACTGTGCGTGGAAGATCAAGACTATAT
GGGCAGGATCAAGAAACTCCAGGAATACTTGGAGAAGGTGAAAAGCATCGTGAAGCCTGGGTGCTCGCAGGATGTTCTCA
AGGCAGCGCTGAGCGCTATGTCATCTGTGACCGAGACATTGNCGATCATGACATCGTCTTCCNCTGGCCNAGGGAACCCC
NCTNTGAGTCAAATGGATTACTAAATCCNCATTCGCTTGTGTCATCTGACATGTGGGGTTAGAAACAGTGATGTTGCAAC
CCCNCGGCNTTCTTTTTCNTGTTTTTTCTTTGGAGAGTTTTGCCATTTTTGAGCCGGTAGCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis