Browse Element(s) Details


Os.12979.3.S1_x_at

Description gb:NM_190466.1
DB_XREF= gi:34908015
GEN=P0460C04.18
TID=Os.12979.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0460C04.18 (P0460C04.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0460C04.18 (P0460C04.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6172010/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61670Os.11151.1.S1_a_at10/111+36009166..36012603expressed protein
LOC_Os01g61680Os.28176.1.S1_at11/111+36013258..36014645expressed protein
LOC_Os01g61680Os.28176.2.S1_x_at7/111+36013258..36014645expressed protein
LOC_Os01g61690Os.8355.1.S1_a_at11/111+36014911..36018483Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g61700NANA1+36019649..36020635ATP-dependent Clp protease adaptor protein ClpS containing protein
LOC_Os01g61710Os.5854.1.S1_a_at10/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61710Os.49267.1.S1_at1/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61720Os.12979.1.S1_x_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.2.S1_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.3.S1_x_at10/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61730OsAffx.11687.2.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_x_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61739NANA1+36045353..36046023NA
LOC_Os01g61750OsAffx.11688.1.S1_at11/111+36047568..36047939hypothetical protein
LOC_Os01g61760Os.14198.1.S1_at11/111+36047870..36053161expressed protein
LOC_Os01g61760OsAffx.20772.1.S1_at1/111+36047870..36053161expressed protein
LOC_Os01g61780Os.14624.2.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_a_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0019761biological_processglucosinolate biosynthesis
GO:0005634cellular_componentnucleus
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12979.3.S1_x_at--293--9171Chr01:36038716..36038740 (25 bp)
TGCCGAAATCGCCTGTTAGTTCAAA
LOC_Os01g61720
Os.12979.3.S1_x_at--257--3291Chr01:36038695..36038719 (25 bp)
CAAAGGATGAGCTTGCCGCTATCAA
LOC_Os01g61720
Os.12979.3.S1_x_at--815--4511Chr01:36038681..36038705 (25 bp)
GCCGCTATCAAGATTCAGACTGCCT
LOC_Os01g61720
Os.12979.3.S1_x_at--700--1651Chr01:36038134..36038158 (25 bp)
AGCGCTGCGAGCACTTAGAGGGCTA
LOC_Os01g61720
Os.12979.3.S1_x_at--41--9331Chr01:36038097..36038121 (25 bp)
TCGCTGGTTGATGGAAACGCCGTCA
LOC_Os01g61720
Os.12979.3.S1_x_at--1042--51Chr01:36038048..36038072 (25 bp)
ATTGCACACAAACCATGACCAGAGT
LOC_Os01g61720
Os.12979.3.S1_x_at--363--2491Chr01:36037979..36038003 (25 bp)
AACAGGCTCTTCAAAGGCAGCTACA
LOC_Os01g61720
Os.12979.3.S1_x_at--291--5211Chr01:36037372..36037396 (25 bp)
GAATTCTGGCCGAACTATAACACCT
LOC_Os01g61720
Os.12979.3.S1_x_at--740--10171Chr01:36037357..36037381 (25 bp)
TATAACACCTACCTTCACGGATCAA
LOC_Os01g61720
Os.12979.3.S1_x_at--1158--2451Chr01:36037231..36037255 (25 bp)
AACAAAGAATCCCAGCACTAGCGCT
LOC_Os01g61720
Os.12979.3.S1_x_at--418--2011NONE
ACTAGCGCTTCTCAGACCTGCAACA
NONE
Target Sequence 
TGCCGAAATCGCCTGTTAGTTCAAAGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGGCAAGA
AGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGGTTGATGGAAACGCCGTCAAACGACAAACTGCGCA
CACCTTGCATTGCACACAAACCATGACCAGAGTTCAAACTCAAATATACTCTAGAAGGGTGAAGATGGAGGAGGAAAAAC
AGGCTCTTCAAAGGCAGCTACAATTAAAGCATCAGAGGGAACTTGAGAAAATGAAGTGGAAGAATTCTGGCCGAACTATA
ACACCTACCTTCACGGATCAAGGGAATCCTAACTGGGGATGGAGCTGGATGGAACGCTGGATGACATCAAGGCCTTGGGA
GAGCCGAGTGATATCAGATAAGGATCCTAAGGACCATTATTCAACAAAGAATCCCAGCACTAGCGCTTCTCAGACCTGCA
ACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12979.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis