Browse Element(s) Details


Os.12980.1.S1_at

Description gb:AK062320.1
DB_XREF= gi:32972338
TID=Os.12980.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-C09, full insert sequence.
FL= gb:AK062320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1156011/11aquaporin NIP-type, putative, expressed
LOC_Os09g036201/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11510Os.27817.1.A1_at11/115+6494060..6496594B-box zinc finger family protein, expressed
LOC_Os05g11520OsAffx.31811.3.S1_x_at11/115+6501246..6502820Zinc knuckle family protein
LOC_Os05g11530OsAffx.31811.5.S1_at4/115+6505608..6506134hypothetical protein
LOC_Os05g11540OsAffx.4304.1.S1_at11/115+6509075..6509818hypothetical protein
LOC_Os05g11550OsAffx.4304.1.A1_at11/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11550Os.19558.1.S1_at10/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11560OsAffx.26836.2.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_s_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560OsAffx.26836.1.S1_at9/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11570Os.57341.1.S1_at4/115+6526085..6527292NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g11580NANA5+6539084..6539365expressed protein
LOC_Os05g11590OsAffx.26837.1.S1_at11/115+6540993..6541256hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006810biological_processtransport
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0015250molecular_functionwater channel activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12980.1.S1_at--341--3631Chr05:6519740..6519764 (25 bp)
CTTGCACAGCAGAAAAAGTCATTTA
LOC_Os05g11560
Os.12980.1.S1_at--787--151Chr05:6519720..6519744 (25 bp)
ATTTAATGACATTAGTTACTCCGTA
LOC_Os05g11560
Os.12980.1.S1_at--635--5671Chr05:6519713..6519737 (25 bp)
GACATTAGTTACTCCGTATTATCAT
LOC_Os05g11560
Os.12980.1.S1_at--871--1211Chr05:6519707..6519731 (25 bp)
AGTTACTCCGTATTATCATGGTACA
LOC_Os05g11560
Os.12980.1.S1_at--546--9911Chr05:6519704..6519728 (25 bp)
TACTCCGTATTATCATGGTACATGC
LOC_Os05g11560
Os.12980.1.S1_at--597--9631Chr05:6519692..6519716 (25 bp)
TCATGGTACATGCTCTATTCTCTCT
LOC_Os05g11560
Os.12980.1.S1_at--150--831Chr05:6519690..6519714 (25 bp)
ATGGTACATGCTCTATTCTCTCTGT
LOC_Os05g11560
Os.12980.1.S1_at--312--7031Chr05:6519687..6519711 (25 bp)
GTACATGCTCTATTCTCTCTGTATG
LOC_Os05g11560
Os.12980.1.S1_at--370--2111Chr05:6519685..6519709 (25 bp)
ACATGCTCTATTCTCTCTGTATGGT
LOC_Os05g11560
Os.12980.1.S1_at--872--9091Chr05:6519682..6519706 (25 bp)
TGCTCTATTCTCTCTGTATGGTTTA
LOC_Os05g11560
Os.12980.1.S1_at--285--3692Chr09:1808042..1808389 (25 bp)
CTATTCTCTCTGTATGGTTTAGCTA
LOC_Os09g03620
Target Sequence 
CTTGCACAGCAGAAAAAGTCATTTAATGACATTAGTTACTCCGTATTATCATGGTACATGCTCTATTCTCTCTGTATGGT
TTAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis