Browse Element(s) Details


Os.13087.1.S1_at

Description gb:AK103020.1
DB_XREF= gi:32988229
TID=Os.13087.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative permease 1 (P0460E08.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116O12, full insert sequence.
FL= gb:AK103020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5550011/11xanthine/uracil permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55470OsAffx.10637.1.S1_s_at6/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55470OsAffx.10637.3.S1_s_at3/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55470OsAffx.10637.4.S1_s_at1/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_x_at7/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_at3/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55490Os.17701.2.S1_at11/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490Os.17701.1.S1_x_at10/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.4.S1_x_at2/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.3.S1_x_at1/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55500Os.13087.1.S1_at11/111+32302851..32306904xanthine/uracil permease family protein, expressed
LOC_Os01g55510Os.49634.1.S1_at11/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55510Os.49634.1.S1_x_at11/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55510Os.42069.1.S1_x_at8/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55520Os.11073.1.S1_at9/111+32313349..32316046pollen-specific kinase partner protein, putative, expressed
LOC_Os01g55530Os.33076.1.S1_at11/111+32318941..32323295expressed protein
LOC_Os01g55540Os.9.1.S1_s_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55540Os.9.1.S1_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13087.1.S1_at--497--171Chr01:32305921..32305945 (25 bp)
ATTTACCATCTTTGCGGCCGTGTAC
LOC_Os01g55500
Os.13087.1.S1_at--896--3991Chr01:32305939..32305963 (25 bp)
CGTGTACTGCGTCTTGTTTGGACTA
LOC_Os01g55500
Os.13087.1.S1_at--340--591Chr01:32306097..32306121 (25 bp)
ATGCGCAACCTCTTTATCGTCGGTG
LOC_Os01g55500
Os.13087.1.S1_at--143--10851Chr01:32306134..32306158 (25 bp)
TTGGCCTATCTGTGCCCGAATACTT
LOC_Os01g55500
Os.13087.1.S1_at--413--331Chr01:32306153..32306177 (25 bp)
ATACTTTTTCCGGTACAGCATGGCC
LOC_Os01g55500
Os.13087.1.S1_at--395--8471Chr01:32306186..32306210 (25 bp)
TGGCCCTGCGCACACAAAAGCTGGA
LOC_Os01g55500
Os.13087.1.S1_at--22--2431Chr01:32306201..32306565 (25 bp)
AAAAGCTGGATGGTTCAACGACTAC
LOC_Os01g55500
Os.13087.1.S1_at--419--10671Chr01:32306617..32306641 (25 bp)
TTCCTGGACAACACGCTGGAGGTGA
LOC_Os01g55500
Os.13087.1.S1_at--522--571Chr01:32306665..32306689 (25 bp)
ATGCCATGGTGGGTACCGTTCCGGT
LOC_Os01g55500
Os.13087.1.S1_at--921--191Chr01:32306801..32306825 (25 bp)
ATTTCGTCGCTGATGCGCGATCGAA
LOC_Os01g55500
Os.13087.1.S1_at--408--6391Chr01:32306819..32306843 (25 bp)
GATCGAATCGTTTGTGTCTGTGTCA
LOC_Os01g55500
Target Sequence 
ATTTACCATCTTTGCGGCCGTGTACTGCGTCTTGTTTGGACTAGTTGCGGCAGTGGGGCTCTCCTTCTTGCAGTTTACTA
ACATGAACTCCATGCGCAACCTCTTTATCGTCGGTGTCTCCATCTTTCTTGGCCTATCTGTGCCCGAATACTTTTTCCGG
TACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGTTCAACGACTACATCAACACTATCTTCTCATC
NCCTCCGACGGTCGGACTGATCGTGGCCGTCTTCCTGGACAACACGCTGGAGGTGAAAAACGCGGNCAAGGACCGGGGGA
TGCCATGGTGGGTACCGTTCCGGTCGTTCAAGGGGGACGCCAGGAGCGAGGAGTTCTACAGCCTGCCCTTCAACCTCAAC
CGCTTCTTCCCTCCGTCTTAAAACCAGCACGGGGAGAAGNTTGAGGGAAACGGGGATTTCGTCGCTGATGCGCGATCGAA
TCGTTTGTGTCTGTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis