Browse Element(s) Details


Os.1310.1.S1_a_at

Description gb:AF004947.1
DB_XREF= gi:2246624
TID=Os.1310.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1310 (NCBI UniGene Cluster)
DEF=Oryza sativa protein kinase mRNA, complete cds.
PROD=protein kinase
FL= gb:AF004947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0224011/11CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os12g0220011/11CBL-interacting serine/threonine-protein kinase 15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02180Os.5998.1.S1_at5/1111+601590..605844Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g02190Os.35188.1.S1_at5/1111+609006..614403expressed protein
LOC_Os11g02200OsAffx.18634.1.S1_at11/1111+617440..619126expressed protein
LOC_Os11g02200Os.46014.1.S1_s_at5/1111+617440..619126expressed protein
LOC_Os11g02210OsAffx.31551.2.S1_s_at11/1111+619887..620816hypothetical protein
LOC_Os11g02210OsAffx.31551.2.S1_at11/1111+619887..620816hypothetical protein
LOC_Os11g02210OsAffx.31551.1.S1_at3/1111+619887..620816hypothetical protein
LOC_Os11g02220OsAffx.30780.1.S1_at11/1111+622812..623552hypothetical protein
LOC_Os11g02230OsAffx.19454.1.S1_at11/1111+625870..627066hypothetical protein
LOC_Os11g02240Os.1310.1.S1_a_at11/1111+629587..632625CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os11g02250OsAffx.19456.1.S1_at11/1111+640564..641001Zinc finger, C3HC4 type family protein
LOC_Os11g02260OsAffx.30781.2.S1_at11/1111+641580..641984Zinc finger, C3HC4 type family protein
LOC_Os11g02260OsAffx.30781.1.S1_s_at11/1111+641580..641984Zinc finger, C3HC4 type family protein
LOC_Os11g02270Os.50557.1.S1_at1/1111+646610..647878expressed protein
LOC_Os11g02280OsAffx.6965.1.S1_at11/1111+648831..649316hypothetical protein
LOC_Os11g02290Os.31991.1.S1_at11/1111+650479..651059expressed protein
LOC_Os11g02290Os.31991.1.S1_s_at11/1111+650479..651059expressed protein
LOC_Os11g02290Os.36558.1.S1_x_at5/1111+650479..651059expressed protein
LOC_Os11g02300Os.28385.1.S1_x_at11/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300Os.28385.2.S1_a_at11/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300Os.28385.3.S1_x_at2/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300OsAffx.25784.1.S1_x_at2/1111+654101..660239mitogen-activated protein kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0005829cellular_componentcytosol
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1310.1.S1_a_at--593--2292Chr12:678606..678630 (25 bp)
AAATGAGGCAAGGTTCACTTCAGAT
LOC_Os12g02200
Os.1310.1.S1_a_at--574--472Chr12:678579..678603 (25 bp)
ATCTGCCTCAACCATAATCTCAAAG
LOC_Os12g02200
Os.1310.1.S1_a_at--490--5132Chr12:678542..678566 (25 bp)
GCAAAGGCGCTAAATCTCAGGGTAA
LOC_Os12g02200
Os.1310.1.S1_a_at--427--5292Chr12:678468..678492 (25 bp)
GAATGGTGTTCTTCAGTTTGACATA
LOC_Os12g02200
Os.1310.1.S1_a_at--486--6052Chr12:678443..678467 (25 bp)
GAGATATTTGAGGTTACCACTTCCT
LOC_Os12g02200
Os.1310.1.S1_a_at--663--1712Chr12:678428..678452 (25 bp)
ACCACTTCCTATCATATCATCGAGA
LOC_Os12g02200
Os.1310.1.S1_a_at--811--1092Chr12:678392..678416 (25 bp)
AGTGGCGATTCATTGGAGTACCGAC
LOC_Os12g02200
Os.1310.1.S1_a_at--583--8552Chr12:678379..678403 (25 bp)
TGGAGTACCGACAGCTACTGGAGGA
LOC_Os12g02200
Os.1310.1.S1_a_at--854--4412Chr12:678345..678369 (25 bp)
GCCAGCTCTGAAGGACATTGTCTTG
LOC_Os12g02200
Os.1310.1.S1_a_at--251--10052Chr12:678261..678285 (25 bp)
TAGTTTCCGCTCCTCAAATTCATTA
LOC_Os12g02200
Os.1310.1.S1_a_at--5--1552Chr12:678191..678215 (25 bp)
AGCATCTATGTTTTTGTATCTGGAG
LOC_Os12g02200
Target Sequence 
AAATGAGGCAAGGTTCACTTCAGATAAATCTGCCTCAACCATAATCTCAAAGCTAGAAGATGTAGCAAAGGCGCTAAATC
TCAGGGTAAGGAAGAAAGACAATGGTGTAGTGAAGATGCAAGGGAGGAAGGAGGGAAGGAATGGTGTTCTTCAGTTTGAC
ATAGAGATATTTGAGGTTACCACTTCCTATCATATCATCGAGATGAAACAAACAAGTGGCGATTCATTGGAGTACCGACA
GCTACTGGAGGAGGGCATCCGGCCAGCTCTGAAGGACATTGTCTTGGCCTGGCATGGAGATGAATAGCAGCAGTCGCAAG
AGTAGATTTTGATGTCTCAAGCATTTAGTTTCCGCTCCTCAAATTCATTAGGTTTTAGCTCAAATGAATTTATTTGTCTT
GCCTATGTTCTTTTTAGCATCTATGTTTTTGTATCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1310.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis