Browse Element(s) Details


Os.1311.1.S1_at

Description gb:AF006825.1
DB_XREF= gi:2267005
GEN=BiP
TID=Os.1311.1
CNT=89
FEA=FLmRNA
TIER=FL+Stack
STK=35
UG=Os.1311 (NCBI UniGene Cluster)
DEF=Oryza sativa endosperm lumenal binding protein (BiP) mRNA, complete cds.
PROD=endosperm lumenal binding protein
FL= gb:AK119653.1 gb:AF006825.1 gb:AK066006.1 gb:AK065743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0241011/11Luminal binding protein 3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02390Os.11671.1.S1_at11/112+818981..824541S1 RNA binding domain containing protein, expressed
LOC_Os02g02400Os.9172.2.S1_x_at11/112+824969..827640Catalase isozyme A, putative, expressed
LOC_Os02g02400Os.9172.2.S1_at11/112+824969..827640Catalase isozyme A, putative, expressed
LOC_Os02g02400Os.9172.1.S1_x_at9/112+824969..827640Catalase isozyme A, putative, expressed
LOC_Os02g02410Os.1311.1.S1_at11/112+838738..842672Luminal binding protein 3 precursor, putative, expressed
LOC_Os02g02424OsAffx.24067.1.S1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02424Os.18086.1.A1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02440OsAffx.24068.1.S1_at11/112+861602..862157hypothetical protein
LOC_Os02g02450Os.7996.1.S1_at11/112+862273..864882transposon protein, putative, unclassified, expressed
LOC_Os02g02460Os.53376.1.S1_at11/112+866007..869292transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005783cellular_componentendoplasmic reticulum
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1311.1.S1_at--1044--9271Chr02:839110..839134 (25 bp)
TCCGCCGTCTACCAGAGGACCGGTG
LOC_Os02g02410
Os.1311.1.S1_at--1025--5771Chr02:839044..839068 (25 bp)
GACGAGCATGACGAGCTGTAGATGA
LOC_Os02g02410
Os.1311.1.S1_at--432--6551Chr02:838995..839019 (25 bp)
GATTCAAAGGAGACAGCCAATTTTT
LOC_Os02g02410
Os.1311.1.S1_at--428--1331Chr02:838967..838991 (25 bp)
AGAGATGGCCGGTTACTTTTAGTGG
LOC_Os02g02410
Os.1311.1.S1_at--104--7371Chr02:838941..838965 (25 bp)
GTGACTTACTACTACCTTGGGTTGG
LOC_Os02g02410
Os.1311.1.S1_at--118--6011Chr02:838895..838919 (25 bp)
GAGAGTTTTATTTGCAGAACACCAG
LOC_Os02g02410
Os.1311.1.S1_at--570--2271Chr02:838860..838884 (25 bp)
AAATCTCTCCTCTTGTTACTTGTGT
LOC_Os02g02410
Os.1311.1.S1_at--858--7411Chr02:838839..838863 (25 bp)
GTGTTGCTCTCTTAGTTTGTTACTC
LOC_Os02g02410
Os.1311.1.S1_at--360--7211Chr02:838813..838837 (25 bp)
GTCGAGTGTAGAACAGCTCTTCCTT
LOC_Os02g02410
Os.1311.1.S1_at--472--1431Chr02:838804..838828 (25 bp)
AGAACAGCTCTTCCTTTTGCTACTT
LOC_Os02g02410
Os.1311.1.S1_at--162--3731Chr02:838785..838809 (25 bp)
CTACTTCCTTCTGATTTCCATGTGA
LOC_Os02g02410
Target Sequence 
TCCGCCGTCTACCAGAGGACCGGTGGCGCCCCGGGTGGCGGCGCCGACGGCGAGGGCGGCGTCGACGACGAGCATGACGA
GCTGTAGATGATGATGATGATGATCTGATTCGATTGATTCAAAGGAGACAGCCAATTTTTGTAAGAGATGGCCGGTTACT
TTTAGTGGGGTGACTTACTACTACCTTGGGTTGGGGTTTAGGGGTAGCAAGAGGGGAGAGTTTTATTTGCAGAACACCAG
AAAAGAGACTAAATCTCTCCTCTTGTTACTTGTGTTGCTCTCTTAGTTTGTTACTCTGTCGAGTGTAGAACAGCTCTTCC
TTTTGCTACTTCCTTCTGATTTCCATGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis