Browse Element(s) Details


Os.13384.1.S1_at

Description gb:AK061175.1
DB_XREF= gi:32971193
TID=Os.13384.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13384 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023147M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-C04, full insert sequence.
FL= gb:AK061175.1 gb:AK072991.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3643910/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36370OsAffx.10040.1.S1_x_at2/113+20120753..20125005hypothetical protein
LOC_Os03g36370OsAffx.10040.2.S1_at1/113+20120753..20125005hypothetical protein
LOC_Os03g36370OsAffx.2126.1.S1_at1/113+20120753..20125005hypothetical protein
LOC_Os03g36370OsAffx.8356.1.S1_x_at1/113+20120753..20125005hypothetical protein
LOC_Os03g36370OsAffx.25476.2.S1_at1/113+20120753..20125005hypothetical protein
LOC_Os03g36380NANA3+20126766..20128236hypothetical protein
LOC_Os03g36390NANA3+20130737..20131186retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36400NANA3+20131865..20132884retrotransposon protein, putative, LINE subclass
LOC_Os03g36420NANA3+20142119..20142391hypothetical protein
LOC_Os03g36439Os.13384.1.S1_at10/113+20142655..20149628F-box domain containing protein, expressed
LOC_Os03g36460OsAffx.25383.1.S1_at11/113+20150230..20150748hypothetical protein
LOC_Os03g36470OsAffx.20440.1.S1_x_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36470OsAffx.20440.2.S1_x_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36470OsAffx.8244.1.S1_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36470OsAffx.20628.1.S1_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36480NANA3+20159535..20161578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36490Os.51689.1.S1_at11/113+20164598..20166450retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g36500OsAffx.13199.1.S1_x_at11/113+20171316..20172853hypothetical protein
LOC_Os03g36500OsAffx.20098.1.S1_at1/113+20171316..20172853hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13384.1.S1_at--30--2331Chr03:20143220..20143244 (25 bp)
AAAGCTTCTCGGCTGAACATCTTCA
LOC_Os03g36439
Os.13384.1.S1_at--1128--8031Chr03:20143170..20143194 (25 bp)
GGAGTTCACGGACTGTTCGAATTGT
LOC_Os03g36439
Os.13384.1.S1_at--865--8111Chr03:20143086..20143110 (25 bp)
GGACTGGCTGGCTGGACCTTCACAA
LOC_Os03g36439
Os.13384.1.S1_at--55--3671Chr03:20143069..20143093 (25 bp)
CTTCACAACCTTCCTGATGCAGTAA
LOC_Os03g36439
Os.13384.1.S1_at--105--9991Chr03:20142952..20142976 (25 bp)
TACCACGCTTTGATGTGCCTTATGT
LOC_Os03g36439
Os.13384.1.S1_at--1067--2591Chr03:20142851..20142875 (25 bp)
AACGAAGCAACGCACGCTACTTGGT
LOC_Os03g36439
Os.13384.1.S1_at--43--7771Chr03:20142829..20142853 (25 bp)
GGTGCAGTGTTGAGCCTTGTTTTAC
LOC_Os03g36439
Os.13384.1.S1_at--345--6671Chr03:20142789..20142813 (25 bp)
GTTGCAGTCTCTTGGGCCTGAGCGA
LOC_Os03g36439
Os.13384.1.S1_at--931--5151Chr03:20142759..20142781 (23 bp)
GCAACGCATGGCTGTTCGGCTGTTC
LOC_Os03g36439
Os.13384.1.S1_at--287--2011Chr03:20142720..20142744 (25 bp)
ACTCTGCTTTGTACTCTTTTGTTAA
LOC_Os03g36439
Os.13384.1.S1_at--822--9791NONE
TTAACCAAAGATGCCCTGTGTTTCC
NONE
Target Sequence 
AAAGCTTCTCGGCTGAACATCTTCATCTGGAACTCAAAATTTGAGCTTGGGGAGTTCACGGACTGTTCGAATTGTGGTGA
ACATTGCATTAATCCTCAAGAGCCTTGTAAGTGCGTGATGGAGCACNAGAGTCATGGACTGGCTGGCTGGACCTTCACAA
CCTTCCTGATGCAGTAAACTGTGACTTAAGTTAAATTGACNATCCTACCTGCTCGTCAAATTTCAACATTTGTCTGGGTT
ACTTGTCAATCAAATGGTGGGTAAGGTGNTACCACGCTTTGATGTGCCTTATGTGGCACTTTATTTTGGAGTTTAATATG
TATGTGATATCACGATTTCCAGCATTTTATTGTCAATGATGTCTTGTGAGAACGAAGCAACGCACGCTACTTGGTGCAGT
GTTGAGCCTTGTTTTACAATAAATTTTAAGTCGTTGCAGTCTCTTGGGCCTGAGCGAGCTGGCAACGCATGGCTGTTCGG
CTGTTCCGCCTGTGCAGAGTACTCTGCTTTGTACTCTTTTGTTAACCAAAGATGCCCTGTGTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis