Browse Element(s) Details


OsAffx.2126.1.S1_at

Description tigr:9629.m02933
TID=OsAffx.2126.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g363701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36310OsAffx.25380.1.S1_at9/113+20092687..20096217hypothetical protein
LOC_Os03g36310OsAffx.21756.5.A1_x_at2/113+20092687..20096217hypothetical protein
LOC_Os03g36310Os.7307.3.S1_x_at2/113+20092687..20096217hypothetical protein
LOC_Os03g36320OsAffx.25381.1.S1_at11/113+20098861..20099274hypothetical protein
LOC_Os03g36330Os.21387.3.S1_at1/113+20105741..20108288retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36330OsAffx.18435.1.S1_x_at1/113+20105741..20108288retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36330Os.36736.1.S1_x_at1/113+20105741..20108288retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36330Os.21387.3.S1_x_at1/113+20105741..20108288retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36350Os.27691.1.S1_x_at1/113+20111644..20113514retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36360Os.27691.2.S1_x_at1/113+20114076..20115074retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36370OsAffx.10040.1.S1_x_at2/113+20120753..20125005hypothetical protein
LOC_Os03g36370OsAffx.10040.2.S1_at1/113+20120753..20125005hypothetical protein
LOC_Os03g36370OsAffx.2126.1.S1_at1/113+20120753..20125005hypothetical protein
LOC_Os03g36370OsAffx.8356.1.S1_x_at1/113+20120753..20125005hypothetical protein
LOC_Os03g36370OsAffx.25476.2.S1_at1/113+20120753..20125005hypothetical protein
LOC_Os03g36380NANA3+20126766..20128236hypothetical protein
LOC_Os03g36390NANA3+20130737..20131186retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36400NANA3+20131865..20132884retrotransposon protein, putative, LINE subclass
LOC_Os03g36420NANA3+20142119..20142391hypothetical protein
LOC_Os03g36439Os.13384.1.S1_at10/113+20142655..20149628F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2126.1.S1_at--462--2431NONE
AAAACCAAGTAGTCGATGTCTCAAG
NONE
OsAffx.2126.1.S1_at--1038--69310Chr08:12768845..12768867 (23 bp)
GTAGTCGATGTCTCAAGCTTGTCCG
NONE
OsAffx.2126.1.S1_at--750--6277Chr10:10210708..10210731 (24 bp)
GATGTCTCAAGCTTGTCCGTGGCCT
NONE
OsAffx.2126.1.S1_at--151--2697Chr10:9315301..9315325 (25 bp)
AAGCTTGTCCGTGGCCTGAAGGTTC
NONE
OsAffx.2126.1.S1_at--391--8714Chr10:9315306..9315330 (25 bp)
TGTCCGTGGCCTGAAGGTTCTCCTT
NONE
OsAffx.2126.1.S1_at--681--4972Chr11:14263016..14263040 (25 bp)
GCATCGTGCAAGAACCAGGTTGTTT
NONE
OsAffx.2126.1.S1_at--112--5172Chr11:14263009..14263033 (25 bp)
GCAAGAACCAGGTTGTTTCTTGATG
NONE
OsAffx.2126.1.S1_at--498--10531Chr01:17570811..17571018 (25 bp)
TTCTTGATGGGTGTTCTCATAATTT
NONE
OsAffx.2126.1.S1_at--959--7711Chr01:17570803..17570827 (25 bp)
GGGTGTTCTCATAATTTTCTTAAAG
NONE
OsAffx.2126.1.S1_at--46--3131Chr01:17570791..17570815 (25 bp)
AATTTTCTTAAAGATCATGCCTGAA
NONE
OsAffx.2126.1.S1_at--527--6431Chr01:17570779..17570803 (25 bp)
GATCATGCCTGAATTGGAATGGAAT
NONE
Target Sequence 
AAAACCAAGTAGTCGATGTCTCAAGCTTGTCCGTGGCCTGAAGGTTCTCCTTCTCAAGAGATGCATCGTGCAAGAACCAG
GTTGTTTCTTGATGGGTGTTCTCATAATTTTCTTAAAGATCATGCCTGAATTGGAATGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis