Browse Element(s) Details


OsAffx.25381.1.S1_at

Description tigr:9631.m03475
TID=OsAffx.25381.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3632011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36270OsAffx.20590.1.S1_at1/113+20075114..20078078retrotransposon protein, putative, unclassified
LOC_Os03g36279NANA3+20078309..20079883retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g36290NANA3+20082970..20088173retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36300NANA3+20088666..20092164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36310OsAffx.25380.1.S1_at9/113+20092687..20096217hypothetical protein
LOC_Os03g36310OsAffx.21756.5.A1_x_at2/113+20092687..20096217hypothetical protein
LOC_Os03g36310Os.7307.3.S1_x_at2/113+20092687..20096217hypothetical protein
LOC_Os03g36320OsAffx.25381.1.S1_at11/113+20098861..20099274hypothetical protein
LOC_Os03g36330Os.21387.3.S1_at1/113+20105741..20108288retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36330OsAffx.18435.1.S1_x_at1/113+20105741..20108288retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36330Os.36736.1.S1_x_at1/113+20105741..20108288retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36330Os.21387.3.S1_x_at1/113+20105741..20108288retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36350Os.27691.1.S1_x_at1/113+20111644..20113514retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36360Os.27691.2.S1_x_at1/113+20114076..20115074retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36370OsAffx.10040.1.S1_x_at2/113+20120753..20125005hypothetical protein
LOC_Os03g36370OsAffx.10040.2.S1_at1/113+20120753..20125005hypothetical protein
LOC_Os03g36370OsAffx.2126.1.S1_at1/113+20120753..20125005hypothetical protein
LOC_Os03g36370OsAffx.8356.1.S1_x_at1/113+20120753..20125005hypothetical protein
LOC_Os03g36370OsAffx.25476.2.S1_at1/113+20120753..20125005hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25381.1.S1_at--1063--8291Chr03:20099158..20099182 (25 bp)
GGCTTCATCTTGGTGCTGCGATCCT
LOC_Os03g36320
OsAffx.25381.1.S1_at--493--9591Chr03:20099151..20099175 (25 bp)
TCTTGGTGCTGCGATCCTGGTGGTA
LOC_Os03g36320
OsAffx.25381.1.S1_at--1157--3811Chr03:20099143..20099167 (25 bp)
CTGCGATCCTGGTGGTAGCGACGGC
LOC_Os03g36320
OsAffx.25381.1.S1_at--127--1651Chr03:20099127..20099151 (25 bp)
AGCGACGGCACTGAGCGGAGGCGAT
LOC_Os03g36320
OsAffx.25381.1.S1_at--430--8351Chr03:20099064..20099088 (25 bp)
GGCGGCGAAACTTGGATTCGCATCG
LOC_Os03g36320
OsAffx.25381.1.S1_at--3--2511Chr03:20099056..20099080 (25 bp)
AACTTGGATTCGCATCGGCGAGGTA
LOC_Os03g36320
OsAffx.25381.1.S1_at--285--8491Chr03:20099003..20099027 (25 bp)
TGGCTGCCGGGCTTGGTATTGTCCT
LOC_Os03g36320
OsAffx.25381.1.S1_at--492--8291Chr03:20098994..20099018 (25 bp)
GGCTTGGTATTGTCCTTGCGGAGAC
LOC_Os03g36320
OsAffx.25381.1.S1_at--271--10851Chr03:20098991..20099015 (25 bp)
TTGGTATTGTCCTTGCGGAGACGAA
LOC_Os03g36320
OsAffx.25381.1.S1_at--989--11Chr03:20098986..20099010 (25 bp)
ATTGTCCTTGCGGAGACGAAGGAAA
LOC_Os03g36320
OsAffx.25381.1.S1_at--374--5791Chr03:20098972..20098996 (25 bp)
GACGAAGGAAATGGCGGCGCTGGAC
LOC_Os03g36320
Target Sequence 
GGCTTCATCTTGGTGCTGCGATCCTGGTGGTAGCGACGGCACTGAGCGGAGGCGATCGAGGCGATGGCGAGGTGCGGCTG
GACCAGGGGCCGGCGGCGGCGAAACTTGGATTCGCATCGGCGAGGTACTTCCAGAGGTCTTCGGCTTCGGGGAAGTGGCT
GCCGGGCTTGGTATTGTCCTTGCGGAGACGAAGGAAATGGCGGCGCTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis