Browse Element(s) Details


Os.13480.1.S1_at

Description gb:AK064939.1
DB_XREF= gi:32974957
TID=Os.13480.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13480 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000P06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000P06, full insert sequence.
FL= gb:AK064939.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1068010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10630OsAffx.25963.1.S1_at10/114+5755640..5759107hypothetical protein
LOC_Os04g10640OsAffx.13757.1.S1_at11/114+5761642..5762419amidase family protein, putative
LOC_Os04g10650Os.49940.1.S1_at11/114+5765594..5768521hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g10650Os.31700.4.S1_x_at3/114+5765594..5768521hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g10660OsAffx.13758.1.S1_at9/114+5770723..5771269hypothetical protein
LOC_Os04g10680Os.13480.1.S1_at10/114+5782079..5791064Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g10690Os.57546.1.S1_x_at1/114+5791368..5793089phosphate:H+ symporter family protein, expressed
LOC_Os04g10690Os.46784.1.S1_x_at1/114+5791368..5793089phosphate:H+ symporter family protein, expressed
LOC_Os04g10700NANA4+5797240..5801426retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g10709NANA4+5802704..5802950NA
LOC_Os04g10720NANA4+5806482..5807662retrotransposon protein, putative, unclassified
LOC_Os04g10724Os.52702.1.S1_at3/114+5808650..5809720hypothetical protein
LOC_Os04g10730Os.40360.1.S1_x_at1/114+5810725..5813044hypothetical protein
LOC_Os04g10740OsAffx.25965.1.S1_at11/114+5815165..5819326retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13480.1.S1_at--108--1551Chr04:5790000..5790024 (25 bp)
AGCATACCGATTGAAGAACCTCTAA
LOC_Os04g10680
Os.13480.1.S1_at--92--5371Chr04:5790015..5790039 (25 bp)
GAACCTCTAACTGGTGTTGAACCAT
LOC_Os04g10680
Os.13480.1.S1_at--783--8971NONE
TGAACCATGCTGTATTTGCCAGGAA
NONE
Os.13480.1.S1_at--31--3411Chr04:5790626..5790650 (25 bp)
CAGACTAGACTGTGGGCATGACTTC
LOC_Os04g10680
Os.13480.1.S1_at--553--4991Chr04:5790657..5790681 (25 bp)
GCATGCATCAAACAATGGCTGGTTA
LOC_Os04g10680
Os.13480.1.S1_at--416--2451Chr04:5790685..5790709 (25 bp)
AAAATCTGTGCCCTATCTGTAAAAA
LOC_Os04g10680
Os.13480.1.S1_at--271--2111Chr04:5790711..5790735 (25 bp)
ACAGGACTGGGCACTTAATTTTGCG
LOC_Os04g10680
Os.13480.1.S1_at--349--6471Chr04:5790759..5790783 (25 bp)
GATAAGCCTCTTTAGACCGAGTGGT
LOC_Os04g10680
Os.13480.1.S1_at--638--6771Chr04:5790798..5790822 (25 bp)
GTTACACCTTCCAAGATCCAACATA
LOC_Os04g10680
Os.13480.1.S1_at--976--8551Chr04:5790875..5790899 (25 bp)
TGGTTGTAGACCTGGAGTTTCTTTT
LOC_Os04g10680
Os.13480.1.S1_at--21--3591Chr04:5790965..5790989 (25 bp)
CATTTCCTAAGTTTTGCCTGTCATT
LOC_Os04g10680
Target Sequence 
AGCATACCGATTGAAGAACCTCTAACTGGTGTTGAACCATGCTGTATTTGCCAGGAAGAATATGCCGAAGGTGAGGACAT
GGGCAGACTAGACTGTGGGCATGACTTCCACACCGCATGCATCAAACAATGGCTGGTTATAAAAAATCTGTGCCCTATCT
GTAAAAAGACAGGACTGGGCACTTAATTTTGCGNGCTTCCGCCTGCGAGGAAAGCGGATAAGCCTCTTTAGACCGAGTGG
TTGGTTATAAGGCATGTTACACCTTCCAAGATCCAACATACAGGTGGAATTTATACTATAGGGTGGTACATGGTACTTTA
CCAGAAAGGCGATGGTTGTAGACCTGGAGTTTCTTTTTCCCTTTTGTTTAAACCTAGATTTGAAGTTTAAAATTTATTCA
ATAACATTCAATTGCAATTGGGCATTTCCTAAGTTTTGCCTGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis