Browse Element(s) Details


OsAffx.13758.1.S1_at

Description tigr:9632.m00939
TID=OsAffx.13758.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g106609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10620OsAffx.22947.2.S1_x_at9/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10620OsAffx.22947.1.S1_x_at8/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10620OsAffx.22947.3.S1_x_at7/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10620OsAffx.22947.5.S1_x_at2/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10630OsAffx.25963.1.S1_at10/114+5755640..5759107hypothetical protein
LOC_Os04g10640OsAffx.13757.1.S1_at11/114+5761642..5762419amidase family protein, putative
LOC_Os04g10650Os.49940.1.S1_at11/114+5765594..5768521hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g10650Os.31700.4.S1_x_at3/114+5765594..5768521hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g10660OsAffx.13758.1.S1_at9/114+5770723..5771269hypothetical protein
LOC_Os04g10680Os.13480.1.S1_at10/114+5782079..5791064Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g10690Os.57546.1.S1_x_at1/114+5791368..5793089phosphate:H+ symporter family protein, expressed
LOC_Os04g10690Os.46784.1.S1_x_at1/114+5791368..5793089phosphate:H+ symporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13758.1.S1_at--14--2971Chr04:5771197..5771221 (25 bp)
AATGGAGGAATAATGCGTAGTTGGC
LOC_Os04g10660
OsAffx.13758.1.S1_at--450--5231Chr04:5771190..5771214 (25 bp)
GAATAATGCGTAGTTGGCTGAAGGA
LOC_Os04g10660
OsAffx.13758.1.S1_at--970--9071Chr04:5771184..5771208 (25 bp)
TGCGTAGTTGGCTGAAGGAGATAAA
LOC_Os04g10660
OsAffx.13758.1.S1_at--510--8551Chr04:5771142..5771166 (25 bp)
TGGATGAAATAGGACCCACTGACAT
LOC_Os04g10660
OsAffx.13758.1.S1_at--804--8951NONE
TGAAATAGGACCCACTGACATGAGG
NONE
OsAffx.13758.1.S1_at--578--3331NONE
CACTGACATGAGGATGGCATTGGCA
NONE
OsAffx.13758.1.S1_at--862--8491Chr04:5770835..5770859 (25 bp)
TGGCATTGGCATCAGCACATTTGGA
LOC_Os04g10660
OsAffx.13758.1.S1_at--245--3611Chr04:5770832..5770856 (25 bp)
CATTGGCATCAGCACATTTGGAGGA
LOC_Os04g10660
OsAffx.13758.1.S1_at--1000--8271Chr04:5770828..5770852 (25 bp)
GGCATCAGCACATTTGGAGGAGATC
LOC_Os04g10660
OsAffx.13758.1.S1_at--951--9651Chr04:5770824..5770848 (25 bp)
TCAGCACATTTGGAGGAGATCATAT
LOC_Os04g10660
OsAffx.13758.1.S1_at--783--3311Chr04:5770820..5770844 (25 bp)
CACATTTGGAGGAGATCATATGGGT
LOC_Os04g10660
Target Sequence 
AATGGAGGAATAATGCGTAGTTGGCTGAAGGAGATAAAGAGGAGAGAGGGTGAGGTGGATGAAATAGGACCCACTGACAT
GAGGATGGCATTGGCATCAGCACATTTGGAGGAGATCATATGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis