Browse Element(s) Details


OsAffx.25963.1.S1_at

Description tigr:9632.m00936
TID=OsAffx.25963.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=amidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1063010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10600NANA4+5736840..5737397hypothetical protein
LOC_Os04g10610OsAffx.25962.1.S1_at11/114+5738619..5742774SWIM zinc finger family protein
LOC_Os04g10620OsAffx.22947.2.S1_x_at9/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10620OsAffx.22947.1.S1_x_at8/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10620OsAffx.22947.3.S1_x_at7/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10620OsAffx.22947.5.S1_x_at2/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10630OsAffx.25963.1.S1_at10/114+5755640..5759107hypothetical protein
LOC_Os04g10640OsAffx.13757.1.S1_at11/114+5761642..5762419amidase family protein, putative
LOC_Os04g10650Os.49940.1.S1_at11/114+5765594..5768521hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g10650Os.31700.4.S1_x_at3/114+5765594..5768521hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g10660OsAffx.13758.1.S1_at9/114+5770723..5771269hypothetical protein
LOC_Os04g10680Os.13480.1.S1_at10/114+5782079..5791064Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004040molecular_functionamidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25963.1.S1_at--754--4671Chr04:5755671..5755695 (25 bp)
GCGGACGACAATGGCCGGACTTTAA
LOC_Os04g10630
OsAffx.25963.1.S1_at--692--7571Chr04:5755687..5755711 (25 bp)
GGACTTTAATTTGCGGCTAACACGG
LOC_Os04g10630
OsAffx.25963.1.S1_at--1080--4831Chr04:5755702..5755726 (25 bp)
GCTAACACGGTATACGTCAGCGGTC
LOC_Os04g10630
OsAffx.25963.1.S1_at--709--311Chr04:5755713..5755737 (25 bp)
ATACGTCAGCGGTCGGGCAGGACAA
LOC_Os04g10630
OsAffx.25963.1.S1_at--229--2771Chr04:5755737..5755761 (25 bp)
AAGACGGCAGTCATGTAGCGAACGA
LOC_Os04g10630
OsAffx.25963.1.S1_at--652--3451Chr04:5755744..5755768 (25 bp)
CAGTCATGTAGCGAACGACGGCGGC
LOC_Os04g10630
OsAffx.25963.1.S1_at--1059--8431Chr04:5755766..5755790 (25 bp)
GGCCATGCGACAAATGGCGGCGACC
LOC_Os04g10630
OsAffx.25963.1.S1_at--686--3911Chr04:5755894..5755918 (25 bp)
CGGCCACGCGGTTGACGTTGCAGAC
LOC_Os04g10630
OsAffx.25963.1.S1_at--275--8351NONE
GGCGGAAGCCAATATGCCGTACAGT
NONE
OsAffx.25963.1.S1_at--66--7991Chr04:5758882..5758906 (25 bp)
GGATGCTGTCCATGTACTGGATAAC
LOC_Os04g10630
OsAffx.25963.1.S1_at--1015--3331Chr04:5758939..5758963 (25 bp)
CACTGGAGCATCATCCAAGTATATC
LOC_Os04g10630
Target Sequence 
GCGGACGACAATGGCCGGACTTTAATTTGCGGCTAACACGGTATACGTCAGCGGTCGGGCAGGACAAAGACGGCAGTCAT
GTAGCGAACGACGGCGGCCATGCGACAAATGGCGGCGACCGCGATGAAGGAGGCGACGGACGCGGGAAACGGCGGCGGGC
GAGCCGGGCGACGGCGGCAGTCCGACGGACGCAGCAGATGGCGGCGACCGAGCCGAACGACGGCGGCCACGCGGTTGACG
TTGCAGACGGCGGCGACCGAGCAGGACGGCTGGCTGTGTGGCGGACGCGGTTACGGCGTCGACCGAGAGGGACGAATGCG
GCGCGTCGGCGGAAGCCAATATGCCGTACAGTGTCGGATGCTGTCCATGTACTGGATAACATTGTTGGGTATGATGCACT
TGATGCTGAAGCCACTGGAGCATCATCCAAGTATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis