Browse Element(s) Details


Os.13483.1.S1_at

Description gb:AK070738.1
DB_XREF= gi:32980761
TID=Os.13483.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13483 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062E24, full insert sequence.
FL= gb:AK070738.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4813011/11Potassium transporter 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48100Os.4627.1.S1_x_at11/117+28725095..28727912CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os07g48100Os.4627.2.S1_at11/117+28725095..28727912CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os07g48110Os.56227.1.S1_s_at11/117+28730154..28730624expressed protein
LOC_Os07g48120OsAffx.28950.1.S1_at11/117+28733548..28737411hypothetical protein
LOC_Os07g48130Os.13483.1.S1_at11/117+28739827..28744207Potassium transporter 2, putative, expressed
LOC_Os07g48140OsAffx.16760.1.S1_at11/117+28750986..28751615hypothetical protein
LOC_Os07g48150Os.54703.1.S1_at11/117+28757768..28759028uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os07g48160Os.11960.1.S1_at11/117+28762733..28767467Alpha-galactosidase precursor, putative, expressed
LOC_Os07g48170Os.52034.1.S1_at10/117+28768642..28774392expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0009826biological_processunidimensional cell growth
GO:0009932biological_processcell tip growth
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13483.1.S1_at--991--4611Chr07:28740710..28740734 (25 bp)
GCGAGAACGCGCTCACGGTGATCGG
LOC_Os07g48130
Os.13483.1.S1_at--775--7751Chr07:28740694..28740718 (25 bp)
GGTGATCGGGACGAACCCTCTCCGG
LOC_Os07g48130
Os.13483.1.S1_at--287--3811Chr07:28740675..28740699 (25 bp)
CTCCGGCGATGCCTCAGCTACGAGG
LOC_Os07g48130
Os.13483.1.S1_at--234--4171Chr07:28740647..28740671 (25 bp)
CCCACGACGGCGTGTCCTCGGTGGA
LOC_Os07g48130
Os.13483.1.S1_at--717--9351Chr07:28740441..28740465 (25 bp)
TCGCACGTGCAGACCAAGCCGGGCT
LOC_Os07g48130
Os.13483.1.S1_at--519--3991Chr07:28740422..28740446 (25 bp)
CGGGCTCGTCGCTGCTGAAGAAGCT
LOC_Os07g48130
Os.13483.1.S1_at--162--3951Chr07:28740307..28740331 (25 bp)
CGGCATGGTCTACGTCCTATGACGT
LOC_Os07g48130
Os.13483.1.S1_at--310--1911Chr07:28740296..28740320 (25 bp)
ACGTCCTATGACGTCACCACGAGAT
LOC_Os07g48130
Os.13483.1.S1_at--1120--6411Chr07:28740274..28740298 (25 bp)
GATCTCATCGATCAATACCCTGTAA
LOC_Os07g48130
Os.13483.1.S1_at--713--9611Chr07:28740270..28740294 (25 bp)
TCATCGATCAATACCCTGTAAAAAA
LOC_Os07g48130
Os.13483.1.S1_at--1046--3271Chr07:28740241..28740265 (25 bp)
CAAAATCAAATCTCTCTGCTTGTAT
LOC_Os07g48130
Target Sequence 
GCGAGAACGCGCTCACGGTGATCGGGACGAACCCTCTCCGGCGATGCCTCAGCTACGAGGCCTCCCACGACGGCGTGTCC
TCGGTGGACGCCGCGCGCAGCCCGAACGGGATAGTGGAGGTCCCGGCGGCGGCGGCGGCGGCGCCGGTGACGAAGAAGGT
GAGGTTCGTGGTGGAGGCGGCGAGCCCGGAGGTGGAGAAGGGCGTGGTGGAGGAGCAGCAGGAGCTGTGCGAGGCGAGGG
AGGCCGGCACGGCGTTCATCCTGGGGCACTCGCACGTGCAGACCAAGCCGGGCTCGTCGCTGCTGAAGAAGCTCGCCGTC
GGCGTCGGGTACAACTTCCTCCGGCGAAACTGCCGCGGCCCGGACGTGGTGCTGCGCGTGCCGCCGGCGTCGCTGCTCGA
GGTCGGCATGGTCTACGTCCTATGACGTCACCACGAGATCTCATCGATCAATACCCTGTAAAAAAAATTCAAAATCAAAT
CTCTCTGCTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis