Browse Element(s) Details


Os.13498.2.S1_at

Description gb:NM_190547.1
DB_XREF= gi:34908177
GEN=P0406G08.3
TID=Os.13498.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.13498 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) ribonuclease II-like protein (P0406G08.3), mRNA.
PROD=ribonuclease II-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6244011/11RNB-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62400Os.55656.1.S1_at9/111+36444018..36445236hypothetical protein
LOC_Os01g62410Os.38177.1.S1_at11/111+36449635..36455336Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g62420Os.12423.1.S1_at11/111+36456283..36459568Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g62420Os.11197.2.S1_x_at1/111+36456283..36459568Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g62430Os.22076.1.S1_a_at11/111+36462670..36464140Elicitor-responsive protein 1, putative, expressed
LOC_Os01g62440Os.13498.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_x_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440OsAffx.2388.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.52574.2.S1_x_at1/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62450NANA1+36481330..36481541hypothetical protein
LOC_Os01g62460Os.11866.1.S1_at11/111+36485157..36488383SCARECROW, putative, expressed
LOC_Os01g62469OsAffx.21751.1.S1_at11/111+36491268..36491989NA
LOC_Os01g62480Os.12346.1.S1_at11/111+36492802..36495788Multicopper oxidase family protein, expressed
LOC_Os01g62480Os.54525.1.S1_x_at1/111+36492802..36495788Multicopper oxidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13498.2.S1_at--1012--9971Chr01:36467897..36467921 (25 bp)
TAGCTCATTATCAGGTAAATATGCC
LOC_Os01g62440
Os.13498.2.S1_at--869--7831Chr01:36467884..36467908 (25 bp)
GGTAAATATGCCTCTGTTATTCCTG
LOC_Os01g62440
Os.13498.2.S1_at--1001--2251Chr01:36467881..36467905 (25 bp)
AAATATGCCTCTGTTATTCCTGCTA
LOC_Os01g62440
Os.13498.2.S1_at--446--3111Chr01:36467880..36467904 (25 bp)
AATATGCCTCTGTTATTCCTGCTAA
LOC_Os01g62440
Os.13498.2.S1_at--34--271Chr01:36467879..36467903 (25 bp)
ATATGCCTCTGTTATTCCTGCTAAT
LOC_Os01g62440
Os.13498.2.S1_at--511--591Chr01:36467878..36467901 (24 bp)
ATGCCTCTGTTATTCCTGCTAATAT
LOC_Os01g62440
Os.13498.2.S1_at--618--4451Chr01:36467878..36467899 (22 bp)
GCCTCTGTTATTCCTGCTAATATTA
LOC_Os01g62440
Os.13498.2.S1_at--671--6791Chr01:36467724..36467893 (25 bp)
GTTATTCCTGCTAATATTAAATTTG
LOC_Os01g62440
Os.13498.2.S1_at--1122--131Chr01:36467709..36467732 (24 bp)
ATTAAATTTGAGTGCTGATGGAAGA
LOC_Os01g62440
Os.13498.2.S1_at--96--7311Chr01:36467698..36467722 (25 bp)
GTGCTGATGGAAGATGTATTAAATT
LOC_Os01g62440
Os.13498.2.S1_at--1050--6871Chr01:36467683..36467707 (25 bp)
GTATTAAATTGCAGATAAAGGCTTT
LOC_Os01g62440
Target Sequence 
TAGCTCATTATCAGGTAAATATGCCTCTGTTATTCCTGCTAATATTAAATTTGAGTGCTGATGGAAGATGTATTAAATTG
CAGATAAAGGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13498.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis