Browse Element(s) Details


Os.13550.1.S1_at

Description gb:AK071042.1
DB_XREF= gi:32981065
TID=Os.13550.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080C02, full insert sequence.
FL= gb:AK071042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1820011/11Dihydrodipicolinate synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g18160OsAffx.22947.2.S1_x_at5/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18160OsAffx.22947.1.S1_x_at4/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18160OsAffx.22947.5.S1_x_at3/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18160OsAffx.22947.3.S1_x_at1/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18170Os.54151.1.S1_x_at4/114+10019868..10021709retrotransposon protein, putative, unclassified
LOC_Os04g18170Os.48015.1.A1_x_at2/114+10019868..10021709retrotransposon protein, putative, unclassified
LOC_Os04g18180OsAffx.31757.1.S1_at3/114+10025842..10026693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g18180OsAffx.31757.2.S1_at2/114+10025842..10026693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g18190OsAffx.26058.1.S1_at11/114+10030787..10031582Zinc knuckle family protein
LOC_Os04g18200Os.13550.1.S1_at11/114+10037029..10040474Dihydrodipicolinate synthase, chloroplast precursor, putative, expressed
LOC_Os04g18220OsAffx.26059.1.S1_at11/114+10042568..10043041hypothetical protein
LOC_Os04g18230NANA4+10054327..10055040retrotransposon, putative, centromere-specific
LOC_Os04g18244OsAffx.8479.1.S1_at2/114+10060266..10070180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g18244Os.46314.2.S1_x_at1/114+10060266..10070180retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009089biological_processlysine biosynthesis via diaminopimelate
GO:0008840molecular_functiondihydrodipicolinate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13550.1.S1_at--324--10811Chr04:10040058..10040082 (25 bp)
TTGTCCGAATCGTTGAATCTATTGG
LOC_Os04g18200
Os.13550.1.S1_at--419--2191Chr04:10040089..10040113 (25 bp)
AAACTTTGTGGGTGAGAACGAGGCA
LOC_Os04g18200
Os.13550.1.S1_at--168--6551Chr04:10040132..10040156 (25 bp)
GATTTTGTGTTGGTCAGTAGGTACT
LOC_Os04g18200
Os.13550.1.S1_at--833--5171Chr04:10040171..10040195 (25 bp)
GCAAGTCCCATGTACGTTGATGAAC
LOC_Os04g18200
Os.13550.1.S1_at--16--10131Chr04:10040211..10040235 (25 bp)
TATGATAGTTTGCAGTCTTCCTTGT
LOC_Os04g18200
Os.13550.1.S1_at--959--9571Chr04:10040226..10040250 (25 bp)
TCTTCCTTGTAGACATTTCAGCACT
LOC_Os04g18200
Os.13550.1.S1_at--672--10332Chr04:10040241..10040265 (25 bp)
TTTCAGCACTTTTTGATCACGCTTG
LOC_Os04g18200
Os.13550.1.S1_at--2--391Chr04:10040256..10040280 (25 bp)
ATCACGCTTGATCGGTTATCAGTGT
LOC_Os04g18200
Os.13550.1.S1_at--1127--771Chr04:10040282..10040306 (25 bp)
ATGGGAATCGTAATCGGGCTTATTT
LOC_Os04g18200
Os.13550.1.S1_at--16--491Chr04:10040294..10040318 (25 bp)
ATCGGGCTTATTTGTACCTTAAATG
LOC_Os04g18200
Os.13550.1.S1_at--859--411Chr04:10040346..10040370 (25 bp)
ATCATGTACATTATCCTTATTCGGA
LOC_Os04g18200
Target Sequence 
TTGTCCGAATCGTTGAATCTATTGGACGGGAAAACTTTGTGGGTGAGAACGAGGCACGGGTTCTTGACGACGATGATTTT
GTGTTGGTCAGTAGGTACTAATAAGTGAATTATGCAAGTCCCATGTACGTTGATGAACATCGTTTAGTTACATTATGATA
GTTTGCAGTCTTCCTTGTAGACATTTCAGCACTTTTTGATCACGCTTGATCGGTTATCAGTGTAATGGGAATCGTAATCG
GGCTTATTTGTACCTTAAATGATAGGTATATTGAGAATAAGCTAAGAGATCATGTACATTATCCTTATTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis