Browse Element(s) Details

Description

gb:CA764549
DB_XREF= gi:27546457
DB_XREF=AF53-Rpf_04_A08_T7_018.ab1
CLONE=C0001160
TID=Os.13590.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.13590 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g38970	1/11	Leucine Rich Repeat family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g38950	Os.52171.1.S1_at	11/11	6	+	23104231..23112077	ABC transporter family protein, putative, expressed
LOC_Os06g38960	Os.9684.1.S1_at	11/11	6	+	23118062..23121172	expressed protein
LOC_Os06g38970	OsAffx.5056.1.S1_x_at	11/11	6	+	23130664..23135276	Leucine Rich Repeat family protein, expressed
LOC_Os06g38970	Os.12667.1.S1_at	11/11	6	+	23130664..23135276	Leucine Rich Repeat family protein, expressed
LOC_Os06g38970	Os.13590.1.S1_x_at	1/11	6	+	23130664..23135276	Leucine Rich Repeat family protein, expressed
LOC_Os06g38980	Os.51905.1.S1_at	11/11	6	+	23135427..23139967	polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38980	OsAffx.5057.1.S1_s_at	11/11	6	+	23135427..23139967	polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38990	Os.51310.1.S1_at	11/11	6	+	23143732..23147848	leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990	Os.55583.1.S1_x_at	1/11	6	+	23143732..23147848	leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990	OsAffx.4190.1.S1_x_at	1/11	6	+	23143732..23147848	leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g39000	OsAffx.15829.1.S1_at	11/11	6	+	23155212..23155634	hypothetical protein
LOC_Os06g39010	OsAffx.15830.1.S1_at	11/11	6	+	23156564..23157463	hypothetical protein

Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0005739	cellular_component	mitochondrion
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.13590.1.S1_x_at--900--367	1	Chr06:23135028..23135052 (25 bp)	CTTTCAGATTGGTTGCGATTTTGCT	LOC_Os06g38970
Os.13590.1.S1_x_at--318--401	1	NONE	GCTGTAAAAGGGTGGGTGTGTTGTT	NONE
Os.13590.1.S1_x_at--651--749	1	NONE	GTGGGTGTGTTGTTCTGTTTCGTTC	NONE
Os.13590.1.S1_x_at--42--863	1	NONE	TGGGTGTGTTGTTCTGTTTCGTTCC	NONE
Os.13590.1.S1_x_at--1150--771	1	NONE	GGGTGTGTTGTTCTGTTTCGTTCCT	NONE
Os.13590.1.S1_x_at--1112--773	1	NONE	GGTGTGTTGTTCTGTTTCGTTCCTT	NONE
Os.13590.1.S1_x_at--328--867	1	NONE	TGTGTTCGTCCTTTTCCTCGTGTAT	NONE
Os.13590.1.S1_x_at--955--741	1	NONE	GTGTTCGTCCTTTTCCTCGTGTATA	NONE
Os.13590.1.S1_x_at--27--1063	1	NONE	TTCGTCCTTTTCCTCGTGTATAGAA	NONE
Os.13590.1.S1_x_at--1060--939	1	NONE	TCGTCCTTTTCCTCGTGTATAGAAG	NONE
Os.13590.1.S1_x_at--1148--921	1	NONE	TCCTTTTCCTCGTGTATAGAAGTTC	NONE

Target Sequence

CTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGGGTGTGTTGTTCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTG
GGAGAGGTGTGTGTGTTCGTCCTTTTCCTCGTGTATAGAAGTTC

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project: