Browse Element(s) Details


Os.13605.1.S1_at

Description gb:AK070870.1
DB_XREF= gi:32980893
TID=Os.13605.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13605 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075A04, full insert sequence.
FL= gb:AK070870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3221011/11Pumilio-family RNA binding repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32170OsAffx.17982.1.S1_at8/119+19194474..19195520hypothetical protein
LOC_Os09g32170OsAffx.30112.1.S1_at1/119+19194474..19195520hypothetical protein
LOC_Os09g32180OsAffx.6465.1.S1_at11/119+19199938..19208076hypothetical protein
LOC_Os09g32190OsAffx.30113.1.S1_at11/119+19209497..19212232tRNA-splicing endonuclease positive effector, putative
LOC_Os09g32200Os.47929.1.S1_at11/119+19215466..19219305Mitochondrial carrier protein, expressed
LOC_Os09g32210Os.13605.1.S1_at11/119+19220106..19227154Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os09g32220Os.12103.1.S1_at9/119+19234783..19238291Protein pob, putative, expressed
LOC_Os09g32230Os.53462.1.S1_at11/119+19238835..19240324Papain family cysteine protease containing protein, expressed
LOC_Os09g32240Os.8791.1.S1_at11/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32240OsAffx.16011.1.S1_at1/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32250Os.6203.1.S1_at11/119+19244513..19249906DNA repair ATPase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13605.1.S1_at--748--6031Chr09:19220701..19220725 (25 bp)
GAGATCCTTCTCAGTCGTGTGAAAA
LOC_Os09g32210
Os.13605.1.S1_at--582--5371Chr09:19220660..19220684 (25 bp)
GAAGAAATACACCTATGCCAAGCAC
LOC_Os09g32210
Os.13605.1.S1_at--415--2731Chr09:19220641..19220665 (25 bp)
AAGCACATCGTCAGCCTAGTCGAGC
LOC_Os09g32210
Os.13605.1.S1_at--492--2871Chr09:19220460..19220484 (25 bp)
AAGGGCTGCTGAATTCGCCACAGGA
LOC_Os09g32210
Os.13605.1.S1_at--600--2611Chr09:19220416..19220440 (25 bp)
AACCCTGTCAAGTTCAGCGTAGAAG
LOC_Os09g32210
Os.13605.1.S1_at--866--6931Chr09:19220398..19220422 (25 bp)
GTAGAAGGCCTATCAGTCGCAAAAG
LOC_Os09g32210
Os.13605.1.S1_at--587--3251Chr09:19220341..19220365 (25 bp)
CAACCTGTCACCATAGATCATCATC
LOC_Os09g32210
Os.13605.1.S1_at--834--7511Chr09:19220213..19220237 (25 bp)
GTGGATGCTGCGTCTCACAGAAGAG
LOC_Os09g32210
Os.13605.1.S1_at--43--8611Chr09:19220175..19220199 (25 bp)
TGGTGCGTTGCCGTACAGTACATAT
LOC_Os09g32210
Os.13605.1.S1_at--213--2091Chr09:19220156..19220180 (25 bp)
ACATATCCCGTAGTCTTGAGTCTTG
LOC_Os09g32210
Os.13605.1.S1_at--486--10811Chr09:19220134..19220158 (25 bp)
TTGTACCCCTGCTTGGTGATGTGTA
LOC_Os09g32210
Target Sequence 
GAGATCCTTCTCAGTCGTGTGAAAATCCATTTGCCATTATTGAAGAAATACACCTATGCCAAGCACATCGTCAGCCTAGT
CGAGCGCCTCTGCGGTGACGGAGCTGTGCAGTCCGAATCCAAAAAAACTGTAACCAAGGGCTGCTGAATTCGCCACAGGA
AAGCCGANTCTTTTCTGCCAACCCTGTCAAGTTCAGCGTAGAAGGCCTATCAGTCGCAAAAGTGGCTAACAAAGCAACCA
AAAAAAAAAANNNNNCAACCTGTCACCATAGATCATCATCATACAGNTATAGTCGTTCCAAGCGGNTNGTCCGTGTATTT
AAGCTAGGAAATGATAGTGTCATACTATAGGAATGGTAATAATCATCTGTGTGGGCTGTGGCTGTGGATGCTGCGTCTCA
CAGAAGAGAGTCTGAGTGTGGTGGTGCGTTGCCGTACAGTACATATCCCGTAGTCTTGAGTCTTGTACCCCTGCTTGGTG
ATGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis