Browse Element(s) Details


Os.13649.1.S1_at

Description gb:AK102783.1
DB_XREF= gi:32987992
TID=Os.13649.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13649 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107K13, full insert sequence.
FL= gb:AK102783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0356011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03500Os.10395.1.S1_s_at9/112+1423747..1424390expressed protein
LOC_Os02g03510Os.11067.1.S1_at11/112+1427398..1428118expressed protein
LOC_Os02g03510Os.10395.1.S1_s_at9/112+1427398..1428118expressed protein
LOC_Os02g03520Os.12307.1.S1_at10/112+1430330..1430872expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_at11/112+1433310..1436848expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_s_at11/112+1433310..1436848expressed protein
LOC_Os02g03540Os.27658.1.S1_a_at11/112+1437433..1441125Ribose-phosphate pyrophosphokinase 1, putative, expressed
LOC_Os02g03550Os.53507.1.S1_at10/112+1443911..1446402xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g03560Os.13649.1.S1_at11/112+1447139..1449635expressed protein
LOC_Os02g03570OsAffx.11879.1.S1_at11/112+1450176..1450766Hsp20/alpha crystallin family protein, expressed
LOC_Os02g03580Os.26491.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_x_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580Os.47413.1.S1_at1/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03590Os.54039.1.S1_at6/112+1461924..1468160expressed protein
LOC_Os02g03600Os.51934.1.S1_at8/112+1469295..1474710DnaJ domain containing protein, expressed
LOC_Os02g03600Os.50120.1.S1_at2/112+1469295..1474710DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13649.1.S1_at--391--10091Chr02:1449041..1449065 (25 bp)
TAGGCGGATTTCCTACTCATCATTC
LOC_Os02g03560
Os.13649.1.S1_at--122--491Chr02:1449068..1449092 (25 bp)
ATCGGCCACCGCTAAGAGGAATGAT
LOC_Os02g03560
Os.13649.1.S1_at--543--191Chr02:1449091..1449115 (25 bp)
ATTTCATGCAGGGTGTGTTCCGCAA
LOC_Os02g03560
Os.13649.1.S1_at--398--2931Chr02:1449114..1449138 (25 bp)
AAGGACATTGCACAGCTCATGGTGT
LOC_Os02g03560
Os.13649.1.S1_at--524--811Chr02:1449132..1449156 (25 bp)
ATGGTGTGATGATCTGTACTGTCCT
LOC_Os02g03560
Os.13649.1.S1_at--35--6771Chr02:1449167..1449191 (25 bp)
GTTCAATTGACTTAGTTTCGCGTAG
LOC_Os02g03560
Os.13649.1.S1_at--524--5711Chr02:1449206..1449230 (25 bp)
GACTCATGGGTGATGGATCCTGCAA
LOC_Os02g03560
Os.13649.1.S1_at--172--751Chr02:1449330..1449354 (25 bp)
ATGTTTACTCCATTCGTCCTTGAAA
LOC_Os02g03560
Os.13649.1.S1_at--943--151Chr02:1449385..1449409 (25 bp)
ATTATCTCAGATTCTCACTACTTCC
LOC_Os02g03560
Os.13649.1.S1_at--347--6491Chr02:1449469..1449493 (25 bp)
GATATCTCCTTTCTCCAAACTGGGA
LOC_Os02g03560
Os.13649.1.S1_at--837--171Chr02:1449526..1449550 (25 bp)
ATTTTACTGTTGTATGACCCACATA
LOC_Os02g03560
Target Sequence 
TAGGCGGATTTCCTACTCATCATTCCCATCGGCCACCGCTAAGAGGAATGATTTCATGCAGGGTGTGTTCCGCAAGGACA
TTGCACAGCTCATGGTGTGATGATCTGTACTGTCCTGGAATTCAAAGTTCAATTGACTTAGTTTCGCGTAGAACAGAAGT
CTCATGACTCATGGGTGATGGATCCTGCAATAATAAAGGGCTGAACAAGTTTTTTGTTGCTCAACCAGTTTANCAAATAG
ATTTTCTAACCAATGATCATAAGACANGTATGTGGTATTCCATAATGGATATGTTTACTCCATTCGTCCTTGAAATGCGC
AAAAGGAACTATGTAGGATTGAAACATTATCTCAGATTCTCACTACTTCCTCTTCACTTCTCTTTTTTTAATTGTCAGAT
TTCCATTTCAGAAATGGCACTACTTTAGAGATATCTCCTTTCTCCAAACTGGGAGATTTCTTTTTCCTAGGAGGAATTCA
CCTTTAATTTTACTGTTGTATGACCCACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis