Browse Element(s) Details


Os.1378.1.S1_at

Description gb:AK102897.1
DB_XREF= gi:32988106
TID=Os.1378.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1378 (NCBI UniGene Cluster)
UG_TITLE=DNA-binding protein GBP16 (Rgbp16) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112P14, full insert sequence.
FL= gb:AK061712.1 gb:AK102897.1 gb:AF020787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2828011/11DNA-binding protein, 42 kDa containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28220OsAffx.27056.1.S1_at11/115+16450431..16451276hypothetical protein
LOC_Os05g28240OsAffx.1196.1.S1_at2/115+16459608..16460894hypothetical protein
LOC_Os05g28240OsAffx.1196.1.S1_x_at1/115+16459608..16460894hypothetical protein
LOC_Os05g28250OsAffx.12179.1.S1_at2/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28250OsAffx.12179.1.S1_x_at1/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28260OsAffx.4452.1.S1_at10/115+16465997..16468463hypothetical protein
LOC_Os05g28270OsAffx.4453.1.S1_at11/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28270OsAffx.28003.2.S1_x_at2/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28270OsAffx.28003.1.S1_at1/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28280Os.1378.1.S1_at11/115+16474078..16477646DNA-binding protein, 42 kDa containing protein, expressed
LOC_Os05g28290Os.11731.1.S1_at11/115+16481663..16484384Ran-binding protein 1 homolog c, putative, expressed
LOC_Os05g28300Os.18379.1.S2_at11/115+16488396..16499850expressed protein
LOC_Os05g28300Os.18379.1.S1_at10/115+16488396..16499850expressed protein
LOC_Os05g28310OsAffx.14860.1.S1_at11/115+16502029..16502646hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016485biological_processprotein processing
GO:0031365biological_processN-terminal protein amino acid modification
GO:0005737cellular_componentcytoplasm
GO:0004239molecular_functionmethionyl aminopeptidase activity
GO:0008235molecular_functionmetalloexopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1378.1.S1_at--394--1451Chr05:16476547..16477063 (25 bp)
AGAAGCCAGGCGACCTTGTTGCACA
LOC_Os05g28280
Os.1378.1.S1_at--453--371Chr05:16477065..16477089 (25 bp)
ATCAAGTTTACTGTGCTTCTGCTGC
LOC_Os05g28280
Os.1378.1.S1_at--260--9111Chr05:16477084..16477108 (25 bp)
TGCTGCCATCTGGTTCACAGAGGGT
LOC_Os05g28280
Os.1378.1.S1_at--630--1331Chr05:16477102..16477126 (25 bp)
AGAGGGTAACATCGCATTCACTTCA
LOC_Os05g28280
Os.1378.1.S1_at--410--131Chr05:16477117..16477141 (25 bp)
ATTCACTTCAGGAGTTGCAGCCCAC
LOC_Os05g28280
Os.1378.1.S1_at--165--6671Chr05:16477130..16477154 (25 bp)
GTTGCAGCCCACTAAATCCATTGAA
LOC_Os05g28280
Os.1378.1.S1_at--186--5191Chr05:16477419..16477443 (25 bp)
GAATTGCTTCCGTTAGTTTTGTACT
LOC_Os05g28280
Os.1378.1.S1_at--1066--3891Chr05:16477512..16477536 (25 bp)
CTGGGAAATGATCCGTCCTGCTGCA
LOC_Os05g28280
Os.1378.1.S1_at--839--9111Chr05:16477530..16477554 (25 bp)
TGCTGCACACTCATTGTCACATGAA
LOC_Os05g28280
Os.1378.1.S1_at--897--8871Chr05:16477577..16477601 (25 bp)
TGATGTGTGTGATTGTTGGCCTTCT
LOC_Os05g28280
Os.1378.1.S1_at--503--10611Chr05:16477598..16477622 (25 bp)
TTCTGTGCTGCCTAACTATGAGTTA
LOC_Os05g28280
Target Sequence 
AGAAGCCAGGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAACATCGCAT
TCACTTCAGGAGTTGCAGCCCACTAAATCCATTGAAGACAACGCTGAGATCAAGGCATGGCTTGCTTTGGGGACAAAAAC
AAAGAAGAAAAGTGGTGCAAAAAAGAAGAAAGGTAAGAAAGGAGATGCAGCAGAAGCAGTGCCTATGGAGGAGGGTTCAA
ATGATGCAAACAAAGAATAACTGATTGTTCTTTTGAATTGCTTCCGTTAGTTTTGTACTTGCTCCNCTGCATCTGATGCT
ATTATATCACATTCAGTTGTGGAAAATCGAGTACTTTTTCAAACTTCCTGGGAAATGATCCGTCCTGCTGCACACTCATT
GTCACATGAAAGCNCAAAATGATGATTACCTATGATGTGTGTGATTGTTGGCCTTCTGTGCTGCCTAACTATGAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis