Browse Element(s) Details


Os.13897.2.S1_at

Description gb:AK067432.1
DB_XREF= gi:32977450
TID=Os.13897.2
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100B13, full insert sequence.
FL= gb:AK067432.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4753010/11AAA-type ATPase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47490OsAffx.5660.1.S1_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47490Os.50601.1.S1_x_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47500Os.10778.1.S1_at11/117+28400640..28407864Histone-arginine methyltransferase CARM1, putative, expressed
LOC_Os07g47510Os.11038.1.S1_at11/117+28408847..28411462Stress-related protein, putative, expressed
LOC_Os07g47520OsAffx.31930.2.S1_at10/117+28416048..28417048hypothetical protein
LOC_Os07g47530Os.13897.1.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47530Os.13897.2.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47540OsAffx.16752.1.S1_at10/117+28434405..28435753expressed protein
LOC_Os07g47550NANA7+28438338..28439762UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g47560NANA7+28442174..28442449hypothetical protein
LOC_Os07g47570Os.16072.1.S1_at2/117+28444286..28446432expressed protein
LOC_Os07g47580Os.10094.1.S1_at11/117+28446864..28449510TGF beta-inducible nuclear protein 1, putative, expressed
LOC_Os07g47590Os.26799.1.A1_at11/117+28451029..28454858heavy metal-induced putative protein 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13897.2.S1_at--741--3711Chr07:28432860..28432884 (25 bp)
CTAGCAGTGATGTTCGTTCCCTAAG
LOC_Os07g47530
Os.13897.2.S1_at--674--9991Chr07:28433328..28433352 (25 bp)
TAGCCTATCGCTAGCCTATGTACAT
LOC_Os07g47530
Os.13897.2.S1_at--754--1531Chr07:28433361..28433385 (25 bp)
AGCATTAGCGTAAAGCGGTCCGGGA
LOC_Os07g47530
Os.13897.2.S1_at--645--5591Chr07:28433395..28433419 (25 bp)
GAAATAGCTCTTCTGTTGTTGTTCA
LOC_Os07g47530
Os.13897.2.S1_at--1062--7751Chr07:28433426..28433450 (25 bp)
GGTGATACCCAGTCAAATTAGTCGT
LOC_Os07g47530
Os.13897.2.S1_at--682--7211Chr07:28433446..28433470 (25 bp)
GTCGTTGATCTCTCTATTCATGTCA
LOC_Os07g47530
Os.13897.2.S1_at--492--7071Chr07:28433467..28433491 (25 bp)
GTCAACTGTAAGTTCGTTAGGCCGA
LOC_Os07g47530
Os.13897.2.S1_at--46--3691Chr07:28433526..28433550 (25 bp)
CTATCAAGCCTGTAAGCCTGACCAT
LOC_Os07g47530
Os.13897.2.S1_at--493--4471Chr07:28433541..28433565 (25 bp)
GCCTGACCATCAGATCGGTTGATTT
LOC_Os07g47530
Os.13897.2.S1_at--875--7211Chr07:28433568..28433592 (25 bp)
GTCGACAGCCAGTGCAATTCATTTA
LOC_Os07g47530
Os.13897.2.S1_at--964--8851Chr07:28433599..28433623 (25 bp)
TGATGCTCGTATCTCTGCAGTTCAA
NONE
Target Sequence 
CTAGCAGTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAGGTATGTGCAAGTATAACATCTGAT
TCGAGAAATATGACTGAGCTTATTCAGTGGAACGATCTATATGGAGAAGGCGGGTCCAGGAAGAAGACTTCTCTAAGCTA
CTTCATGTAGCCTATCGCTAGCCTATGTACATACAACATAAGCATTAGCGTAAAGCGGTCCGGGAGATAGACAAGAAATA
GCTCTTCTGTTGTTGTTCATGTATAGGTGATACCCAGTCAAATTAGTCGTTGATCTCTCTATTCATGTCAACTGTAAGTT
CGTTAGGCCGAAGTGTAGCGTAGAAAAACCNGGTTTGGAACTTGAACTATCAAGCCTGTAAGCCTGACCATCAGATCGGT
TGATTTATGTCGACAGCCAGTGCAATTCATTTAATCNATTGATGCTCGTATCTCTGCAGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13897.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis