Browse Element(s) Details


Os.13915.1.S1_at

Description gb:AK061585.1
DB_XREF= gi:32971603
TID=Os.13915.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665A11.15 (P0665A11.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-E07, full insert sequence.
FL= gb:AK061585.1 gb:AK061253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5639011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56370Os.45996.1.A1_x_at11/111+32811584..32816819expressed protein
LOC_Os01g56370OsAffx.28228.1.S1_x_at1/111+32811584..32816819expressed protein
LOC_Os01g56380Os.35778.1.S1_at11/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed
LOC_Os01g56380Os.47886.1.S1_at1/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed
LOC_Os01g56390Os.13915.1.S1_at11/111+32835247..32838750F-box domain containing protein, expressed
LOC_Os01g56400Os.2175.1.S1_a_at11/111+32840542..32843876ABC transporter family protein, expressed
LOC_Os01g56410OsAffx.25367.1.S1_at1/111+32844555..32848855retrotransposon, putative, centromere-specific
LOC_Os01g56420Os.42024.1.S1_at11/111+32850176..32851015Ctr copper transporter family protein, expressed
LOC_Os01g56430Os.30148.1.S1_at11/111+32853138..32853771Ctr copper transporter family protein, expressed
LOC_Os01g56440OsAffx.11622.1.S1_at7/111+32854639..32854869NA
LOC_Os01g56450Os.26282.1.S1_at11/111+32861705..32862760expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13915.1.S1_at--37--531Chr01:32837454..32837478 (25 bp)
ATCGAACAGCGGCACAGGTGCTTCT
LOC_Os01g56390
Os.13915.1.S1_at--1062--1031Chr01:32837439..32837463 (25 bp)
AGGTGCTTCTCAAGCGGCGGACATA
LOC_Os01g56390
Os.13915.1.S1_at--596--9471Chr01:32837394..32837418 (25 bp)
TCTGACCATCAGAGAGGCAGCTTCA
LOC_Os01g56390
Os.13915.1.S1_at--1152--8251Chr01:32837379..32837403 (25 bp)
GGCAGCTTCAGAGAGCTCTACACTT
LOC_Os01g56390
Os.13915.1.S1_at--872--7111Chr01:32835643..32835667 (25 bp)
GTCATGGTGGACATCAGGCATCTGT
LOC_Os01g56390
Os.13915.1.S1_at--715--4272Chr04:22140398..22140417 (20 bp)
CCTGTTTATGTTGGGCTGTTTGGCA
NONE
Os.13915.1.S1_at--331--8211Chr01:32835570..32835594 (25 bp)
GGAATGTGTTATCTGCAGCAAAAGC
LOC_Os01g56390
Os.13915.1.S1_at--765--3311Chr01:32835515..32835539 (25 bp)
CACATGAGGTTGGAGTGCCCGGTCA
LOC_Os01g56390
Os.13915.1.S1_at--877--1131Chr01:32835502..32835526 (25 bp)
AGTGCCCGGTCATGCAGACAACGCA
LOC_Os01g56390
Os.13915.1.S1_at--700--2211Chr01:32835485..32835509 (25 bp)
ACAACGCATCTGTTGATTGTCTCTT
LOC_Os01g56390
Os.13915.1.S1_at--537--6171Chr01:32835456..32835480 (25 bp)
GAGGAGGCCCCATCGATTATTAGAT
LOC_Os01g56390
Target Sequence 
ATCGAACAGCGGCACAGGTGCTTCTCAAGCGGCGGACATATAGTCTTGAAATGAACTCATTCTGACCATCAGAGAGGCAG
CTTCAGAGAGCTCTACACTTTGGGGAGGATATGATGGGATGCTATTGAGACGTATCTAGGAGTCATGGTGGACATCAGGC
ATCTGTAAGTATATACACCTGTTTATGTTGGGCTGTTTGGCATAGAGTTGGAATGGAATGTGTTATCTGCAGCAAAAGCA
CCCTGAAGAAATGCCATGAAATACATCTACACATGAGGTTGGAGTGCCCGGTCATGCAGACAACGCATCTGTTGATTGTC
TCTTCTACGAGGAGGCCCCATCGATTATTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis