Browse Element(s) Details


Os.13927.1.S1_at

Description gb:AK066393.1
DB_XREF= gi:32976411
TID=Os.13927.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.13927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013061M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061M13, full insert sequence.
FL= gb:AK061487.1 gb:AK066393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3590011/11thioredoxin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35860Os.17728.1.S1_at10/112+21537741..21542976expressed protein
LOC_Os02g35870OsAffx.2874.1.S1_at11/112+21544431..21548848Avr9 elicitor response protein, putative, expressed
LOC_Os02g35880Os.17332.1.S1_at10/112+21552995..21554882expressed protein
LOC_Os02g35890OsAffx.12365.1.S1_at11/112+21555979..21557399expressed protein
LOC_Os02g35890Os.12762.1.S1_at11/112+21555979..21557399expressed protein
LOC_Os02g35900Os.13927.1.S1_at11/112+21557610..21560696thioredoxin family protein, putative, expressed
LOC_Os02g35910Os.22480.1.S1_at10/112+21563419..21568280protein phosphatase 2C, putative, expressed
LOC_Os02g35920OsAffx.2875.1.S1_at11/112+21574785..21575216hypothetical protein
LOC_Os02g35930OsAffx.12366.1.S1_at9/112+21576520..21577673hypothetical protein
LOC_Os02g35940Os.54566.1.S1_at11/112+21581898..215831482-Hydroxyisoflavanone dehydratase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13927.1.S1_at--401--671Chr02:21560285..21560309 (25 bp)
ATGAAGCTCTGCAAGGGCTCCGGCG
LOC_Os02g35900
Os.13927.1.S1_at--894--8491Chr02:21560038..21560062 (25 bp)
TGGCAGACCGGCTTCGCATCAAGGT
LOC_Os02g35900
Os.13927.1.S1_at--766--10631Chr02:21559898..21560050 (25 bp)
TTCGCATCAAGGTGGTGCCGCTGTT
LOC_Os02g35900
Os.13927.1.S1_at--241--9651Chr02:21557867..21557891 (25 bp)
TCAGAGGAGCCATCACAGGAGGGAT
LOC_Os02g35900
Os.13927.1.S1_at--793--711Chr02:21557844..21557868 (25 bp)
ATGATTCCACACAGGGTTGAGTTGC
LOC_Os02g35900
Os.13927.1.S1_at--1146--6671Chr02:21557824..21557848 (25 bp)
GTTGCGTGTCATGATCTGAACTCAA
LOC_Os02g35900
Os.13927.1.S1_at--1055--6871Chr02:21557798..21557822 (25 bp)
GTATTAGCGATCTCACTACAACGAA
LOC_Os02g35900
Os.13927.1.S1_at--442--8291Chr02:21557767..21557791 (25 bp)
GGCATTCTATATAGGCCAGTGTATC
LOC_Os02g35900
Os.13927.1.S1_at--732--5691Chr02:21557701..21557725 (25 bp)
GACTTATAGTTAACACTGCTGCATC
LOC_Os02g35900
Os.13927.1.S1_at--266--4771Chr02:21557684..21557708 (25 bp)
GCTGCATCTTTTGTGCTACAGCACA
LOC_Os02g35900
Os.13927.1.S1_at--741--1491Chr02:21557665..21557689 (25 bp)
AGCACAATTGTACCATTCCTACGGG
LOC_Os02g35900
Target Sequence 
ATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCNCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGA
GCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGG
CGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCA
GAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGTGTCATGATCTGAACTCAAAGTATTAGCGATCTC
ACTACAACGAAGAAATTGGCATTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTT
ATAGACTTATAGTTAACACTGCTGCATCTTTTGTGCTACAGCACAATTGTACCATTCCTACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis