Browse Element(s) Details


Os.13941.1.S1_s_at

Description gb:AK071481.1
DB_XREF= gi:32981504
TID=Os.13941.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023113A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091A07, full insert sequence.
FL= gb:AK071481.1 gb:AK071687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0772011/11Allinase, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07680Os.6821.1.S1_at11/115+4107214..4112242CENP-E like kinetochore protein, putative, expressed
LOC_Os05g07690Os.35448.1.S1_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.2.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.1.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07700Os.11021.1.S1_s_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700OsAffx.14582.1.S1_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700Os.11021.2.S1_x_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07710Os.52780.1.S1_at10/115+4123002..4126984SVP1-like protein 2, putative, expressed
LOC_Os05g07720Os.13941.1.S1_x_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07720Os.13941.1.S1_s_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07730Os.53590.1.S1_at1/115+4139455..4142800hypothetical protein
LOC_Os05g07740OsAffx.14583.1.S1_at11/115+4150945..4154446leucine-rich repeat protein kinase, putative, expressed
LOC_Os05g07750OsAffx.14584.3.S1_x_at11/115+4156750..4157286hypothetical protein
LOC_Os05g07750OsAffx.14584.3.S1_at11/115+4156750..4157286hypothetical protein
LOC_Os05g07764OsAffx.26775.1.S1_at11/115+4158028..4163796Carboxyl-terminal proteinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016846molecular_functioncarbon-sulfur lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13941.1.S1_s_at--704--4611Chr05:4133670..4133694 (25 bp)
GCGAGGATTAAGATCAAGCTTAATT
LOC_Os05g07720
Os.13941.1.S1_s_at--700--9411Chr05:4133700..4133724 (25 bp)
TCGTCGTCGTCTTTGGTTGCTTCAT
LOC_Os05g07720
Os.13941.1.S1_s_at--317--7211Chr05:4133702..4133726 (25 bp)
GTCGTCGTCTTTGGTTGCTTCATCA
LOC_Os05g07720
Os.13941.1.S1_s_at--341--9411Chr05:4133703..4133727 (25 bp)
TCGTCGTCTTTGGTTGCTTCATCAA
LOC_Os05g07720
Os.13941.1.S1_s_at--924--4011Chr05:4133704..4133728 (25 bp)
CGTCGTCTTTGGTTGCTTCATCAAG
LOC_Os05g07720
Os.13941.1.S1_s_at--1058--2531Chr05:4133793..4133817 (25 bp)
AACTCTATATAATTTTGGATCGACT
LOC_Os05g07720
Os.13941.1.S1_s_at--35--9551Chr05:4133796..4133820 (25 bp)
TCTATATAATTTTGGATCGACTCTT
LOC_Os05g07720
Os.13941.1.S1_s_at--1131--10151Chr05:4133800..4133824 (25 bp)
TATAATTTTGGATCGACTCTTAAAA
LOC_Os05g07720
Os.13941.1.S1_s_at--12--6291Chr05:4133829..4133853 (25 bp)
GATGTTGTGTTGTGAGACTTTAATT
LOC_Os05g07720
Os.13941.1.S1_s_at--1068--7391Chr05:4133835..4133859 (25 bp)
GTGTTGTGAGACTTTAATTTGTGAG
LOC_Os05g07720
Os.13941.1.S1_s_at--922--7371Chr05:4133840..4133864 (25 bp)
GTGAGACTTTAATTTGTGAGTTTGT
LOC_Os05g07720
Target Sequence 
GCGAGGATTAAGATCAAGCTTAATTAGTTATCGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGGTTCTAGATATCGATCT
GGGGTGCATGCANTGGTAATGTGCTTTGGTTAATATTAGTCCNAAACTCTATATAATTTTGGATCGACTCTTAAAATTTC
GATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13941.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis