Browse Element(s) Details


Os.13941.1.S1_x_at

Description gb:AK071481.1
DB_XREF= gi:32981504
TID=Os.13941.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023113A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091A07, full insert sequence.
FL= gb:AK071481.1 gb:AK071687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0772011/11Allinase, C-terminal domain containing protein, expressed
LOC_Os11g067001/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07680Os.6821.1.S1_at11/115+4107214..4112242CENP-E like kinetochore protein, putative, expressed
LOC_Os05g07690Os.35448.1.S1_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.2.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.1.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07700Os.11021.1.S1_s_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700OsAffx.14582.1.S1_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700Os.11021.2.S1_x_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07710Os.52780.1.S1_at10/115+4123002..4126984SVP1-like protein 2, putative, expressed
LOC_Os05g07720Os.13941.1.S1_x_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07720Os.13941.1.S1_s_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07730Os.53590.1.S1_at1/115+4139455..4142800hypothetical protein
LOC_Os05g07740OsAffx.14583.1.S1_at11/115+4150945..4154446leucine-rich repeat protein kinase, putative, expressed
LOC_Os05g07750OsAffx.14584.3.S1_x_at11/115+4156750..4157286hypothetical protein
LOC_Os05g07750OsAffx.14584.3.S1_at11/115+4156750..4157286hypothetical protein
LOC_Os05g07764OsAffx.26775.1.S1_at11/115+4158028..4163796Carboxyl-terminal proteinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
GO:0016846molecular_functioncarbon-sulfur lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13941.1.S1_x_at--307--8451Chr05:4133259..4133283 (25 bp)
GGCCACTGCACCTTCGCCAACGAGA
LOC_Os05g07720
Os.13941.1.S1_x_at--182--4151Chr05:4133402..4133426 (25 bp)
CGCGTGGCTGCGCTGCGGGAAGGAA
LOC_Os05g07720
Os.13941.1.S1_x_at--55--9171Chr05:4133452..4133476 (25 bp)
TGCGCGAGCGCAAGATCATCAGCCG
LOC_Os05g07720
Os.13941.1.S1_x_at--736--4611Chr05:4133455..4133479 (25 bp)
GCGAGCGCAAGATCATCAGCCGCGG
LOC_Os05g07720
Os.13941.1.S1_x_at--132--4571Chr05:4133494..4133518 (25 bp)
GCGCCGACGGGAGGGTGGTCAGGAT
LOC_Os05g07720
Os.13941.1.S1_x_at--255--7511Chr05:4133508..4133532 (25 bp)
GTGGTCAGGATCAGCATGCTCGACA
LOC_Os05g07720
Os.13941.1.S1_x_at--53--7131Chr05:4133511..4133535 (25 bp)
GTCAGGATCAGCATGCTCGACACCG
LOC_Os05g07720
Os.13941.1.S1_x_at--174--1791Chr05:4133532..4133556 (25 bp)
ACCGACGAGGCGTTCGCCATCTTCG
LOC_Os05g07720
Os.13941.1.S1_x_at--1146--792Chr11:3262963..3263070 (24 bp)
AGGCGTTCGCCATCTTCGTCGACCG
LOC_Os11g06700
Os.13941.1.S1_x_at--1--511Chr05:4133582..4133606 (25 bp)
ATCGGTCGATCGAGCGAGCGAGCTC
LOC_Os05g07720
Os.13941.1.S1_x_at--706--4051Chr05:4133639..4133663 (25 bp)
CGATGTCGACGATGAGATGGTCAGT
LOC_Os05g07720
Target Sequence 
GGCCACTGCACCTTCGCCAACGAGACCGTCTCCGCCTACCCCCCGTTCGCGTGGCTGCGCTGCGGGAAGGAAGGGGTGGA
CGACCTGNAGGGGNTACCTGCGCGAGCGCAAGATCATCAGCCGCGGCGGCGGCAAGTTCGGCGCCGACGGGAGGGTGGTC
AGGATCAGCATGCTCGACACCGACGAGGCGTTCGCCATCTTCGTCGACCGCCTCGCCGCCATGAACTGATCGGTCGATCG
AGCGAGCGAGCTCGCCCCAGCTAGGGCTTGATCTTGAATCTTGATCGATGTCGACGATGAGATGGTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13941.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis