Browse Element(s) Details


Os.13978.1.S1_a_at

Description gb:AK069306.1
DB_XREF= gi:32979330
TID=Os.13978.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13978 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012H08, full insert sequence.
FL= gb:AK069306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4124011/11MYB transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41200Os.54462.1.S1_at11/115+24047031..24047769EF hand family protein, expressed
LOC_Os05g41210Os.10290.1.S1_at8/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41210Os.57504.1.S1_x_at1/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41220Os.15191.1.S1_s_at11/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41220Os.27951.1.S1_at1/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41230Os.47896.1.A1_at11/115+24066128..24068334BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os05g41240Os.13978.1.S1_a_at11/115+24070525..24074848MYB transcription factor, putative, expressed
LOC_Os05g41250OsAffx.27273.1.S1_x_at11/115+24088126..24088692VQ motif family protein
LOC_Os05g41250OsAffx.27273.1.S1_at11/115+24088126..24088692VQ motif family protein
LOC_Os05g41259NANA5+24090501..24091191NA
LOC_Os05g41270OsAffx.15056.1.S1_s_at11/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41270OsAffx.15056.1.S1_at10/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41280OsAffx.15057.1.S1_at11/115+24097147..24098979Transcription factor HBP-1b, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13978.1.S1_a_at--1131--3551Chr05:24071056..24071080 (25 bp)
CATCATCATCATACAGCTCTTGTAA
LOC_Os05g41240
Os.13978.1.S1_a_at--188--1591Chr05:24071042..24071066 (25 bp)
AGCTCTTGTAATTATCAGGATGTCC
LOC_Os05g41240
Os.13978.1.S1_a_at--68--8011Chr05:24071025..24071049 (25 bp)
GGATGTCCTAAAAGCCCTAGCAAGC
LOC_Os05g41240
Os.13978.1.S1_a_at--305--4551Chr05:24071012..24071036 (25 bp)
GCCCTAGCAAGCAATTTTCCTTCTT
LOC_Os05g41240
Os.13978.1.S1_a_at--167--7631Chr05:24070982..24071006 (25 bp)
GGGAAATTGCCCTGAGTTGAATCAT
LOC_Os05g41240
Os.13978.1.S1_a_at--776--6651Chr05:24070967..24070991 (25 bp)
GTTGAATCATGTAGCCAGAAAGAGT
LOC_Os05g41240
Os.13978.1.S1_a_at--133--5571Chr05:24070950..24070974 (25 bp)
GAAAGAGTACACATTTACACGCAAT
LOC_Os05g41240
Os.13978.1.S1_a_at--930--9851Chr05:24070935..24070959 (25 bp)
TACACGCAATACATTTGCTGTGAAG
LOC_Os05g41240
Os.13978.1.S1_a_at--799--8651Chr05:24070917..24070941 (25 bp)
TGTGAAGAGGGTGTGCCTCCCTGAA
LOC_Os05g41240
Os.13978.1.S1_a_at--1151--7451Chr05:24070907..24070931 (25 bp)
GTGTGCCTCCCTGAAGTTATATGTG
LOC_Os05g41240
Os.13978.1.S1_a_at--139--4471Chr05:24070903..24070927 (25 bp)
GCCTCCCTGAAGTTATATGTGAATG
LOC_Os05g41240
Target Sequence 
CATCATCATCATACAGCTCTTGTAATTATCAGGATGTCCTAAAAGCCCTAGCAAGCAATTTTCCTTCTTTTGAAGGGAAA
TTGCCCTGAGTTGAATCATGTAGCCAGAAAGAGTACACATTTACACGCAATACATTTGCTGTGAAGAGGGTGTGCCTCCC
TGAAGTTATATGTGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13978.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis