Browse Element(s) Details


Os.14093.1.S1_at

Description gb:AK101373.1
DB_XREF= gi:32986582
TID=Os.14093.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033035N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033035N15, full insert sequence.
FL= gb:AK060408.1 gb:AK101373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4649011/11mov34 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46440OsAffx.27339.1.S1_s_at10/115+26823935..26824332expressed protein
LOC_Os05g46450OsAffx.27340.1.S1_at10/115+26824875..26827544expressed protein
LOC_Os05g46460Os.6023.1.S1_s_at11/115+26830088..26834118hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os05g46470Os.23829.1.S1_at4/115+26839226..26840128hypothetical protein
LOC_Os05g46480Os.12551.1.S1_s_at11/115+26844337..26845612Late embryogenesis abundant protein, expressed
LOC_Os05g46490Os.14093.1.S1_at11/115+26847829..26852599mov34 family protein, putative, expressed
LOC_Os05g46500OsAffx.15128.1.S1_x_at11/115+26854087..26854760expressed protein
LOC_Os05g46500Os.55373.1.S1_at5/115+26854087..26854760expressed protein
LOC_Os05g46510Os.9759.1.S1_x_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46510Os.9759.2.S1_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46520Os.5687.1.S1_at10/115+26860109..26862543Polygalacturonase family protein, expressed
LOC_Os05g46530Os.54919.1.S1_at9/115+26865119..26866466pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g46540OsAffx.4637.1.S1_at9/115+26866999..26868286hypothetical protein
LOC_Os05g46550Os.49604.1.S1_at11/115+26869303..26872649Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os05g46560OsAffx.4638.1.S1_s_at11/115+26875251..26878167Ran GTPase activating protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14093.1.S1_at--739--10071Chr05:26852027..26852051 (25 bp)
TAGTGGCACCAGTTCTCTGATGGCA
LOC_Os05g46490
Os.14093.1.S1_at--483--2231Chr05:26852062..26852086 (25 bp)
AAATGAGCCCCAGAAGTCCTAGCGG
LOC_Os05g46490
Os.14093.1.S1_at--964--5571Chr05:26852098..26852122 (25 bp)
GAAAGGCTTCCTGATTTCAATCTTG
LOC_Os05g46490
Os.14093.1.S1_at--305--7351Chr05:26852136..26852160 (25 bp)
GTGAATATCGTGAGCTGCGGTTCCA
LOC_Os05g46490
Os.14093.1.S1_at--129--551Chr05:26852177..26852201 (25 bp)
ATCCCCATTTTTCCGGTGTATGAAG
LOC_Os05g46490
Os.14093.1.S1_at--936--8471Chr05:26852212..26852236 (25 bp)
TGGCTTTGTACATACCTCAACTCCT
LOC_Os05g46490
Os.14093.1.S1_at--549--10711Chr05:26852251..26852275 (25 bp)
TTGTAAAAGTTACTGCGGCCTCCCT
LOC_Os05g46490
Os.14093.1.S1_at--150--10651Chr05:26852333..26852357 (25 bp)
TTCCGAGGGCTTATTCCATGAGCTT
LOC_Os05g46490
Os.14093.1.S1_at--1149--7711Chr05:26852371..26852395 (25 bp)
GGGTGGTTGCTTTCTTTGAGCTATT
LOC_Os05g46490
Os.14093.1.S1_at--876--9011Chr05:26852407..26852431 (25 bp)
TGCAATGCATTTCCCGTGCAGGCAA
LOC_Os05g46490
Os.14093.1.S1_at--260--3851Chr05:26852493..26852517 (25 bp)
CTGAAATGCTCAGGCACACTTGCTG
LOC_Os05g46490
Target Sequence 
TAGTGGCACCAGTTCTCTGATGGCACAGGATAAGCAAATGAGCCCCAGAAGTCCTAGCGGCACCGGCCGGAGAAAGGCTT
CCTGATTTCAATCTTGTTCACTTGACATGGTGAATATCGTGAGCTGCGGTTCCACCCCTTNGCTATCTGCAATCCCCATT
TTTCCGGTGTATGAAGGTGTGTACAGTGGCTTTGTACATACCTCAACTCCTCAGCACCAGTGCTGTTGTAAAAGTTACTG
CGGCCTCCCTTGGCTTTGTACTGCTGTTCCTCGCGCTGCTGCTTAATTTGCGCCAAATCCCTTTCCCTTCCGAGGGCTTA
TTCCATGAGCTTGTAGTTTGTGCTGGGGTGGTTGCTTTCTTTGAGCTATTGCTAATTAAGATGCAATGCATTTCCCGTGC
AGGCAAAGACGAAGCTTGTTTTTGCTTTGCTGTTGGAACAGATCATGTACTATTACCAATCCAAAAGCTGAAATGCTCAG
GCACACTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis