Browse Element(s) Details


Os.14167.1.S1_at

Description gb:AK099384.1
DB_XREF= gi:32984593
TID=Os.14167.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.14167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076F23, full insert sequence.
FL= gb:AK060181.1 gb:AK099384.1 gb:AK067794.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1474011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14710NANA6+8282059..8282487Myb-like DNA-binding domain containing protein
LOC_Os06g14720NANA6+8293715..8294335retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g14730OsAffx.24046.3.S1_x_at11/116+8297393..8299635Transposase, putative
LOC_Os06g14730OsAffx.24046.7.S1_x_at6/116+8297393..8299635Transposase, putative
LOC_Os06g14730OsAffx.24046.5.S1_x_at2/116+8297393..8299635Transposase, putative
LOC_Os06g14730OsAffx.24046.2.S1_x_at1/116+8297393..8299635Transposase, putative
LOC_Os06g14740Os.14167.1.S1_at11/116+8300781..8315924expressed protein
LOC_Os06g14750OsAffx.15432.1.S1_at11/116+8316768..8324556Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os06g14750OsAffx.17864.1.S1_x_at1/116+8316768..8324556Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os06g14760OsAffx.4839.1.S1_at10/116+8326555..8329839hypothetical protein
LOC_Os06g14760Os.10263.1.S1_at2/116+8326555..8329839hypothetical protein
LOC_Os06g14760Os.26999.1.A1_at2/116+8326555..8329839hypothetical protein
LOC_Os06g14760Os.49936.2.A1_at1/116+8326555..8329839hypothetical protein
LOC_Os06g14760Os.51841.1.S1_x_at1/116+8326555..8329839hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0006098biological_processpentose-phosphate shunt
GO:0003824molecular_functioncatalytic activity
GO:0004332molecular_functionfructose-bisphosphate aldolase activity
GO:0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14167.1.S1_at--774--10031Chr06:8314798..8314819 (22 bp)
TAGAGGACCTTCGTGCATTGACAAT
LOC_Os06g14740
Os.14167.1.S1_at--916--2311Chr06:8314824..8314848 (25 bp)
AAAGGTGTTAGCTTGGTTCTCCATG
LOC_Os06g14740
Os.14167.1.S1_at--1026--4251Chr06:8314855..8314879 (25 bp)
CCGGACTGCCTCATGAACTTGTAAA
LOC_Os06g14740
Os.14167.1.S1_at--555--5531Chr06:8315425..8315449 (25 bp)
GAAACAGCTACCTTGAATCCCTTAA
LOC_Os06g14740
Os.14167.1.S1_at--40--6571Chr06:8315468..8315492 (25 bp)
GATTCATGTCATGGCATCTGCTAAG
LOC_Os06g14740
Os.14167.1.S1_at--801--5971Chr06:8315517..8315541 (25 bp)
GAGAAAATGCGCCTGTTCGGTTCAT
LOC_Os06g14740
Os.14167.1.S1_at--891--1231Chr06:8315561..8315585 (25 bp)
AGTTGCATCGCCACTTATGAACACT
LOC_Os06g14740
Os.14167.1.S1_at--1075--8531Chr06:8315651..8315675 (25 bp)
TGGAGCCCAGCCCATAATCTGAAGA
LOC_Os06g14740
Os.14167.1.S1_at--584--131Chr06:8315680..8315704 (25 bp)
ATTACCGACTCTTGGCTGAAGTGCT
LOC_Os06g14740
Os.14167.1.S1_at--948--6591Chr06:8315712..8315736 (25 bp)
GATTGATGCCATTCTGTCATGTGAT
LOC_Os06g14740
Os.14167.1.S1_at--817--9931Chr06:8315758..8315782 (25 bp)
TACGTCGTCTGGTCCTTTAGAGCAA
LOC_Os06g14740
Target Sequence 
TAGAGGACCTTCGTGCATTGACAATGAAGAAAGGTGTTAGCTTGGTTCTCCATGGAGCATCCGGACTGCCTCATGAACTT
GTAAAGGAATGCATAGCTTTGGGGGTGAGGAAATTCAACGTGAACACGGAGGTCCGAAACAGCTACCTTGAATCCCTTAA
AAGGCCAGAAAAGGACCTGATTCATGTCATGGCATCTGCTAAGGAAGCAATGAAAGCTGTTGTGGCTGAGAAAATGCGCC
TGTTCGGTTCATCTGGGAAAGCTTGAGTTCAAGTTGCATCGCCACTTATGAACACTCCATGAACACTTAATTCTGGAGGC
ATGATTGGTCCGTGGGATTAAGACATCTTGATAGACTGCAGTGGAGCCCAGCCCATAATCTGAAGAACTCATTACCGACT
CTTGGCTGAAGTGCTTCGGAGTGATTGATGCCATTCTGTCATGTGATCAAGTTCATGTCCATACTACATACGTCGTCTGG
TCCTTTAGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis