Browse Element(s) Details


Os.14187.1.S1_at

Description gb:AK064610.1
DB_XREF= gi:32974628
TID=Os.14187.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-B06, full insert sequence.
FL= gb:AK064610.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2922010/11Formate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g291801/11Formate dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29180Os.4156.1.S1_at11/116+16648550..16652246Formate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g29180Os.14187.1.S1_at1/116+16648550..16652246Formate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g29190NANA6+16657544..16657780hypothetical protein
LOC_Os06g29200Os.28943.1.S1_x_at4/116+16664050..16667053retrotransposon protein, putative, unclassified
LOC_Os06g29210NANA6+16667675..16673638retrotransposon protein, putative, unclassified
LOC_Os06g29220Os.14187.1.S1_at10/116+16675495..16682026Formate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g29230OsAffx.15659.1.S1_at11/116+16683094..16683462hypothetical protein
LOC_Os06g29240OsAffx.27861.1.S1_at11/116+16686153..16686944hypothetical protein
LOC_Os06g29240OsAffx.27101.1.S1_at1/116+16686153..16686944hypothetical protein
LOC_Os06g29250NANA6+16692824..16693456expressed protein
LOC_Os06g29260OsAffx.28454.1.S1_s_at11/116+16701260..16702064hypothetical protein
LOC_Os06g29260OsAffx.28454.1.S1_at9/116+16701260..16702064hypothetical protein
LOC_Os06g29260OsAffx.28454.2.S1_at1/116+16701260..16702064hypothetical protein
LOC_Os06g29270OsAffx.940.1.S1_x_at1/116+16705403..16712256retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006564biological_processL-serine biosynthesis
GO:0009611biological_processresponse to wounding
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004617molecular_functionphosphoglycerate dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14187.1.S1_at--746--10831Chr06:16680430..16680454 (25 bp)
TTGTGATCAACATGCCTCTTACGGA
LOC_Os06g29220
Os.14187.1.S1_at--555--5571Chr06:16680592..16680616 (25 bp)
GAAAGGTGTGACCATTGTGAACAAT
LOC_Os06g29220
Os.14187.1.S1_at--602--3491Chr06:16680641..16680665 (25 bp)
CAGGCGGTTGCTGACGCTTGCGCCA
LOC_Os06g29220
Os.14187.1.S1_at--326--10711Chr06:16680658..16680681 (24 bp)
TTGCGCCAGTGGTCACGTTGCAGGA
LOC_Os06g29220
Os.14187.1.S1_at--450--3292Chr06:16681035..16681059 (25 bp)
CAAAGGATCACCCATGGCGATACAT
LOC_Os06g29220
Os.14187.1.S1_at--781--6471NONE
GATACATGCCCAATCACGCTATGAC
NONE
Os.14187.1.S1_at--473--691Chr06:16681073..16681097 (25 bp)
ATGACCCCTCACTGCTCTGGGACTA
LOC_Os06g29220
Os.14187.1.S1_at--577--8271Chr06:16681809..16681833 (25 bp)
GGCAGGCCAGCTCGCCAGCCAGTAT
LOC_Os06g29220
Os.14187.1.S1_at--538--10831Chr06:16681857..16681881 (25 bp)
TTGGGTGGGTGTCCATATATCCTCT
LOC_Os06g29220
Os.14187.1.S1_at--755--251Chr06:16681873..16681897 (25 bp)
ATATCCTCTGTTTATTCCTCAAGTG
LOC_Os06g29220
Os.14187.1.S1_at--496--5531Chr06:16681947..16681971 (25 bp)
GAAACACCCTCTGTTAATGTTGTAG
LOC_Os06g29220
Target Sequence 
TTGTGATCAACATGCCTCTTACGGAGAAAACAAGAGGTATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTG
ACCATTGTGAACAATGCTCGTGGAGCAATCATGGATACCCAGGCGGTTGCTGACGCTTGCGCCAGTGGTCACGTTGCAGG
ATATGGTGGTGACGTCTGGTTCCCCCAGCCAGCACCAAAGGATCACCCATGGCGATACATGCCCAATCACGCTATGACCC
CTCACTGCTCTGGGACTACAATTGATGGACAGCTGAGATACGCGGCGGGGGTAAAGGACATGCTGGACAGGTATTTCAAA
GGGGAGGACTTCCCGGCGCAGAACTACATCGTCAAGGCAGGCCAGCTCGCCAGCCAGTATCAGTAATNACCCCCCCTTGT
GTGTTGGGTGGGTGTCCATATATCCTCTGTTTATTCCTCAAGTGTGGAATTATTTCTCAAGGGAGAGAGGGACGGATAGG
ANCCAACAGCCNAAGAAACACCCTCTGTTAATGTTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis