Browse Element(s) Details


Os.14200.1.S1_at

Description gb:AK069060.1
DB_XREF= gi:32979084
TID=Os.14200.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0032N04.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023005G23, full insert sequence.
FL= gb:AK104976.1 gb:AK069060.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2407010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24010OsAffx.20423.2.S1_x_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24010OsAffx.20423.1.S1_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24020Os.51020.1.S1_at10/1110+11976544..11980225transposon protein, putative, unclassified, expressed
LOC_Os10g24030OsAffx.18369.1.S1_at11/1110+11981065..11981416hypothetical protein
LOC_Os10g24040OsAffx.24242.2.S1_at11/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040Os.31929.11.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040OsAffx.24242.5.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24050OsAffx.30518.1.S1_at11/1110+11988785..11990321Ribosome inactivating protein
LOC_Os10g24060OsAffx.20421.1.S1_at11/1110+11993380..11994214hypothetical protein
LOC_Os10g24060OsAffx.15574.1.S1_at1/1110+11993380..11994214hypothetical protein
LOC_Os10g24070Os.14200.2.S1_x_at11/1110+11996060..12005435expressed protein
LOC_Os10g24070Os.14200.1.S1_at10/1110+11996060..12005435expressed protein
LOC_Os10g24080OsAffx.6747.2.S1_x_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.2.S1_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.1.S1_x_at2/1110+12006370..12007211hypothetical protein
LOC_Os10g24090NANA10+12011279..12011986hypothetical protein
LOC_Os10g24100OsAffx.20420.1.S1_at11/1110+12017946..12021917hypothetical protein
LOC_Os10g24100OsAffx.20423.2.S1_x_at1/1110+12017946..12021917hypothetical protein
LOC_Os10g24110Os.31497.2.S1_x_at1/1110+12024225..12026729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24120Os.51501.1.S2_x_at2/1110+12027371..12031452hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14200.1.S1_at--223--411Chr10:12005041..12005065 (25 bp)
ATCAGATACGTTTCATTTGTTTTAG
LOC_Os10g24070
Os.14200.1.S1_at--641--8151Chr10:12005110..12005134 (25 bp)
TGGAACTAGGTTTCTGGTCCCAGTA
LOC_Os10g24070
Os.14200.1.S1_at--813--7271Chr10:12005140..12005164 (25 bp)
GTCCACTACGTTTTCTTCCATGTAA
LOC_Os10g24070
Os.14200.1.S1_at--1147--2251Chr10:12005184..12005208 (25 bp)
AAATAATCCGGTTCACACTTCTCAT
LOC_Os10g24070
Os.14200.1.S1_at--1150--9691Chr10:12005196..12005220 (25 bp)
TCACACTTCTCATCCAAGGCATGAA
LOC_Os10g24070
Os.14200.1.S1_at--1123--4971Chr10:12005214..12005238 (25 bp)
GCATGAAAGGATTGCGTCGCAGCAG
LOC_Os10g24070
Os.14200.1.S1_at--199--7231Chr10:12005229..12005253 (25 bp)
GTCGCAGCAGTAAATCATGATCGTT
LOC_Os10g24070
Os.14200.1.S1_at--319--711Chr10:12005257..12005281 (25 bp)
ATGAGGATCACCAAAGCTTTGCCTT
LOC_Os10g24070
Os.14200.1.S1_at--1079--6791Chr10:12005285..12005309 (25 bp)
GTTTTGTGCATCAGCAATTAGGCTA
LOC_Os10g24070
Os.14200.1.S1_at--697--1751NONE
ACCTCATGTATATTGCCTGTGTTGC
NONE
Os.14200.1.S1_at--120--4971Chr10:12005337..12005361 (25 bp)
GCATACTTGCATCTTGTAAAATCTG
LOC_Os10g24070
Target Sequence 
ATCAGATACGTTTCATTTGTTTTAGAAATCAATTATTTGTTCATACTTTTCTTGTATATGAAGTTCTATTGGAACTAGGT
TTCTGGTCCCAGTACCTTTGTCCACTACGTTTTCTTCCATGTAATACAGAAACAAAGATGAAAAAATAATCCGGTTCACA
CTTCTCATCCAAGGCATGAAAGGATTGCGTCGCAGCAGTAAATCATGATCGTTGCAATGAGGATCACCAAAGCTTTGCCT
TCATGTTTTGTGCATCAGCAATTAGGCTATGAGAATACCTCATGTATATTGCCTGTGTTGCATACTTGCATCTTGTAAAA
TCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis