Browse Element(s) Details


Os.14200.2.S1_x_at

Description gb:NM_196191.1
DB_XREF= gi:37533741
TID=Os.14200.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0032N04.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0032N04.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2407011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24010OsAffx.20423.2.S1_x_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24010OsAffx.20423.1.S1_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24020Os.51020.1.S1_at10/1110+11976544..11980225transposon protein, putative, unclassified, expressed
LOC_Os10g24030OsAffx.18369.1.S1_at11/1110+11981065..11981416hypothetical protein
LOC_Os10g24040OsAffx.24242.2.S1_at11/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040Os.31929.11.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040OsAffx.24242.5.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24050OsAffx.30518.1.S1_at11/1110+11988785..11990321Ribosome inactivating protein
LOC_Os10g24060OsAffx.20421.1.S1_at11/1110+11993380..11994214hypothetical protein
LOC_Os10g24060OsAffx.15574.1.S1_at1/1110+11993380..11994214hypothetical protein
LOC_Os10g24070Os.14200.2.S1_x_at11/1110+11996060..12005435expressed protein
LOC_Os10g24070Os.14200.1.S1_at10/1110+11996060..12005435expressed protein
LOC_Os10g24080OsAffx.6747.2.S1_x_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.2.S1_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.1.S1_x_at2/1110+12006370..12007211hypothetical protein
LOC_Os10g24090NANA10+12011279..12011986hypothetical protein
LOC_Os10g24100OsAffx.20420.1.S1_at11/1110+12017946..12021917hypothetical protein
LOC_Os10g24100OsAffx.20423.2.S1_x_at1/1110+12017946..12021917hypothetical protein
LOC_Os10g24110Os.31497.2.S1_x_at1/1110+12024225..12026729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24120Os.51501.1.S2_x_at2/1110+12027371..12031452hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14200.2.S1_x_at--1149--4852Chr10:12003203..12003227 (25 bp)
GCTAGTAGCTTCTGGTGATCACGGA
LOC_Os10g24070
Os.14200.2.S1_x_at--1013--8071Chr10:12003225..12003249 (25 bp)
GGAGCTGCTCTCAAGGTTGCATCCA
LOC_Os10g24070
Os.14200.2.S1_x_at--113--2851Chr10:12003348..12003372 (25 bp)
AAGTCAGTTTCATTACCCGTTCTTG
LOC_Os10g24070
Os.14200.2.S1_x_at--1056--6731Chr10:12003366..12003386 (21 bp)
GTTCTTGCAAGTTCTCTCCAGATTG
LOC_Os10g24070
Os.14200.2.S1_x_at--256--4911Chr10:12004331..12004355 (25 bp)
GCTTCAGATGTGCAAGGACCGTTTT
LOC_Os10g24070
Os.14200.2.S1_x_at--884--8071Chr10:12004346..12004370 (25 bp)
GGACCGTTTTGAGCACTTTTTGAAG
LOC_Os10g24070
Os.14200.2.S1_x_at--1078--5271Chr10:12004437..12004461 (25 bp)
GAATGTGCTAATGGATCTTCTCAAA
LOC_Os10g24070
Os.14200.2.S1_x_at--547--2491Chr10:12004466..12004490 (25 bp)
AACATGCTCTAGTGGCAAGGTGCTA
LOC_Os10g24070
Os.14200.2.S1_x_at--99--6951Chr10:12004498..12004522 (25 bp)
GTAGTAGCCCTCAGGAGTCATCAGA
LOC_Os10g24070
Os.14200.2.S1_x_at--910--5211Chr10:12004934..12004958 (25 bp)
GAATTTCTTGCTTTGCCAAGGGCTG
LOC_Os10g24070
Os.14200.2.S1_x_at--627--8931Chr10:12004957..12004981 (25 bp)
TGACGCGATCCAACTGCTTATGCAA
LOC_Os10g24070
Target Sequence 
GCTAGTAGCTTCTGGTGATCACGGAGCTGCTCTCAAGGTTGCATCCACTCATCTGGGGCCTCTTGCTGCCAGTAACCAAG
CTTTACTGAAACCTTTGAAGGAAACTTTAGTAACACTAATTCAACCCTGTGAAGATGTACTCACAAAGTCAGTTTCATTA
CCCGTTCTTGCAAGTTCTCTCCAGATTGCAATGAGCAGGAGGCTTGGTATTGAAGAACCTCAGTTAATGAAGATAATTAG
AACAACACTTCACACGCACAGCGAATGGTTTAAGCTTCAGATGTGCAAGGACCGTTTTGAGCACTTTTTGAAGATTGATT
CTCTAAAAGAGGTTGATCCATCTGCGGGGAGTCACAATATGTCCAAGGTTCTTACAGATGAATGTGCTAATGGATCTTCT
CAAATCACAACATGCTCTAGTGGCAAGGTGCTAGATGAAGGTAGTAGCCCTCAGGAGTCATCAGAAGTTACCTGTGATGA
AAACGCCATACTCAAGGTCATGGAATTTCTTGCTTTGCCAAGGGCTGACGCGATCCAACTGCTTATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14200.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis