Browse Element(s) Details


Os.14216.1.S1_at

Description gb:AK100571.1
DB_XREF= gi:32985780
TID=Os.14216.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein phosphatase 2C (P0020E09.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105D23, full insert sequence.
FL= gb:AK100571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7453011/11protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74490Os.48758.1.A1_s_at11/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74490Os.28573.1.S1_at10/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74500NANA1+43470565..43473637hypothetical protein
LOC_Os01g74510Os.33444.1.A1_at11/111+43479351..43484933expressed protein
LOC_Os01g74510Os.33444.2.S1_at1/111+43479351..43484933expressed protein
LOC_Os01g74520Os.14216.3.S1_x_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74520Os.53500.1.S1_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74530Os.14216.1.S1_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74530Os.14216.1.S1_a_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74540Os.42941.1.S1_s_at11/111+43498943..43499888GATA zinc finger family protein, expressed
LOC_Os01g74550Os.42940.1.S1_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74550Os.42940.1.S1_x_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74560OsAffx.9725.1.S1_at7/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74560OsAffx.27865.1.S1_x_at3/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74570OsAffx.9724.1.S1_at11/111+43512468..43513164Tetraspanin family protein
LOC_Os01g74580Os.38811.1.S1_a_at11/111+43516019..43520381DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14216.1.S1_at--427--5551Chr01:43490976..43491000 (25 bp)
GAAACCTGGGAGCTGCATAACTTCA
LOC_Os01g74530
Os.14216.1.S1_at--417--5411Chr01:43490788..43490812 (25 bp)
GAAGCTGGAGGTAGCCCTGTGCAAT
LOC_Os01g74530
Os.14216.1.S1_at--657--1371Chr01:43490762..43490786 (25 bp)
AGAGCCGGACTTGTTTGCTTTCAGC
LOC_Os01g74530
Os.14216.1.S1_at--1099--8991Chr01:43490728..43490752 (25 bp)
TGAATGTATGTCCATCTTCACCGCG
LOC_Os01g74530
Os.14216.1.S1_at--313--5571Chr01:43490697..43490721 (25 bp)
GAAAGATCCATTCCATCTCGTTCAT
LOC_Os01g74530
Os.14216.1.S1_at--167--3431Chr01:43490671..43490695 (25 bp)
CAGTATTTTCGTTCTGCGGTAGTAC
LOC_Os01g74530
Os.14216.1.S1_at--457--3811Chr01:43490579..43490603 (25 bp)
CTGCCCTATTTGTAAAGCGTTCCTT
LOC_Os01g74530
Os.14216.1.S1_at--196--4631Chr01:43490563..43490587 (25 bp)
GCGTTCCTTTGGCAAGTCTTTGGAT
LOC_Os01g74530
Os.14216.1.S1_at--1021--491Chr01:43490520..43490544 (25 bp)
ATCGTCATCCATCAGTTTGTCACTA
LOC_Os01g74530
Os.14216.1.S1_at--760--211Chr01:43490451..43490475 (25 bp)
ATTTGTTAGTTACTTGCTCTGCCCA
LOC_Os01g74530
Os.14216.1.S1_at--862--4811Chr01:43490436..43490460 (25 bp)
GCTCTGCCCATTTTTATAGGACCAT
LOC_Os01g74530
Target Sequence 
GAAACCTGGGAGCTGCATAACTTCAGCATCTCCCTCCGCCTCTCAAGTCTCCGTTGTACTATGTGCTAGAGAGGGCTTTG
GAGAGTTTGAAGCTGGAGGTAGCCCTGTGCAATGAGAGCCGGACTTGTTTGCTTTCAGCTTTGGACTTTGAATGTATGTC
CATCTTCACCGCGGCAGNAAGAAAGATCCATTCCATCTCGTTCATTCAGTATTTTCGTTCTGCGGTAGTACATATATTTA
TATAACAGAGAACACATGCAAGTGAGAATCACAATTTTGATTGCAGCATCGNATTGAACTGCCCTATTTGTAAAGCGTTC
CTTTGGCAAGTCTTTGGATTTTGAGAGCNAAATTAGTGATCGTCATCCATCAGTTTGTCACTATGTAAAGAGTTGCAGCG
ATGTGAGCNAAATATCCNATTTATAGAATTTGTTAGTTACTTGCTCTGCCCATTTTTATAGGACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis