Browse Element(s) Details


Os.14237.1.S1_at

Description gb:BI805402
DB_XREF= gi:15852606
DB_XREF=S037F12
CLONE=S037F12
TID=Os.14237.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14237 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g457801/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45770Os.1313.1.S1_at11/112+27870110..27878201Agamous-like MADS box protein AGL6, putative, expressed
LOC_Os02g45780Os.9558.1.S1_s_at11/112+27881343..27882381Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g45780Os.14237.1.S1_at1/112+27881343..27882381Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g45790NANA2+27886218..27892335retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g45800Os.46995.1.S1_x_at3/112+27892665..27895585retrotransposon protein, putative, unclassified
LOC_Os02g45800Os.46995.1.S1_at2/112+27892665..27895585retrotransposon protein, putative, unclassified
LOC_Os02g45810Os.49863.1.S1_at10/112+27900643..27903516TRANSPARENT TESTA GLABRA 1 protein, putative, expressed
LOC_Os02g45820Os.57549.1.S1_s_at2/112+27904023..27906068Mitochondrial import inner membrane translocase subunit Tim13, putative, expressed
LOC_Os02g45830OsAffx.24743.1.S1_at10/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.16187.1.S1_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.3613.1.S1_x_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.27522.1.S1_x_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.3613.1.S1_at1/112+27907001..27910083expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0010200biological_processresponse to chitin
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14237.1.S1_at--617--3771Chr02:27881844..27881863 (20 bp)
CTCGGCCGGTTGACGTGCCCCTGTG
LOC_Os02g45780
Os.14237.1.S1_at--658--511NONE
ATCGTTGGTGGAAGGCAGTCGCGCC
NONE
Os.14237.1.S1_at--882--9791NONE
TAAGCTAGCTTTACTGCTGCCTGGT
NONE
Os.14237.1.S1_at--147--10011NONE
TAGCTTTACTGCTGCCTGGTTAAAT
NONE
Os.14237.1.S1_at--960--10471NONE
TTACTGCTGCCTGGTTAAATCAACG
NONE
Os.14237.1.S1_at--679--4771NONE
GCTGCCTGGTTAAATCAACGGAAGA
NONE
Os.14237.1.S1_at--957--5351NONE
GAAGAACAAAAGCTCTCTTTCCCCT
NONE
Os.14237.1.S1_at--784--10351NONE
TTTTTTCTCCCGAGGATTATCCCAG
NONE
Os.14237.1.S1_at--115--10291NONE
TTTCTCCCGAGGATTATCCCAGCTG
NONE
Os.14237.1.S1_at--61--2171NONE
ACACCACCTGTTGGTTTGGCCCAGG
NONE
Os.14237.1.S1_at--695--8571NONE
TGGTTTGGCCCAGGCCTGGCACCTG
NONE
Target Sequence 
CTCGGCCGGTTGACGTGCCCCTGTGCCGCTCCACCCCCTGCTGCCGCGCGCGCTGCCCCACCGCCGGCCCCGCGCGGGCG
ACTGGCCGCCTCGCCACCCGCCTCACGGGCGTCTTTGGTGAATCAATATTTGGCCCGCGCGACCGCGACGGCGACACGGG
ATCGTTGGTGGAAGGCAGTCGCGCCATTTCACAGCNCCTAAGCTAGCTTTACTGCTGCCTGGTTAAATCAACGGAAGAAC
AAAAGCTCTCTTTCCCCTTTCGGTTTCCTTTTCTTTTTTTCTCCCGAGGATTATCCCAGCTGGAGGAGAGTGGGTACGTG
TCGGAATCGGTGGAATATATCGATGATTAGACGGTAGGGAACAATTTAATTAGAACCCCCACACCACCTGTTGGTTTGGC
CCAGGCCTGGCACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis