Browse Element(s) Details


Os.14245.1.S1_s_at

Description gb:AK059776.1
DB_XREF= gi:32969794
TID=Os.14245.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-306-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-A11, full insert sequence.
FL= gb:AK059776.1 gb:AK104220.1 gb:AK104105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0532011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05280Os.33755.1.S1_at9/113+2532954..2538336Ras family protein, expressed
LOC_Os03g05290Os.12366.1.S1_x_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed
LOC_Os03g05290Os.12366.1.S1_a_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed
LOC_Os03g05300Os.18033.1.S1_at2/113+2551174..2551645cyclin-dependent kinases regulatory subunit, putative, expressed
LOC_Os03g05310Os.16119.1.S1_at11/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05310Os.16824.1.A1_at1/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05320Os.14245.1.S1_s_at11/113+2560314..2562693expressed protein
LOC_Os03g05330Os.27179.1.S1_at11/113+2576121..2584586HEAT repeat family protein, expressed
LOC_Os03g05330OsAffx.24977.1.S1_x_at11/113+2576121..2584586HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14245.1.S1_s_at--924--6111Chr03:2561560..2561584 (25 bp)
GAGTGATTCAACATCTCAACAGCTT
LOC_Os03g05320
Os.14245.1.S1_s_at--231--1731Chr03:2561714..2561738 (25 bp)
ACCATTTCCATTTCGAGCATTACCT
LOC_Os03g05320
Os.14245.1.S1_s_at--281--4051Chr03:2561727..2561751 (25 bp)
CGAGCATTACCTGTTGAAGCCATTG
LOC_Os03g05320
Os.14245.1.S1_s_at--191--1231Chr03:2561768..2561792 (25 bp)
AGTTCTTGAGCAACTACTCCGAGTC
LOC_Os03g05320
Os.14245.1.S1_s_at--591--6091Chr03:2561788..2561812 (25 bp)
GAGTCATGCTTCCACGATTTTTGAA
LOC_Os03g05320
Os.14245.1.S1_s_at--241--3511Chr03:2562308..2562332 (25 bp)
CATGGGCTTCGGGTGATTCTTCAAG
LOC_Os03g05320
Os.14245.1.S1_s_at--649--8991Chr03:2562358..2562382 (25 bp)
TGAAGCTTCGCAGTGTCTCCATTAG
LOC_Os03g05320
Os.14245.1.S1_s_at--614--4731Chr03:2562436..2562460 (25 bp)
GCTGTTTATACGTCGTTTTGCTCAC
LOC_Os03g05320
Os.14245.1.S1_s_at--913--3031Chr03:2562463..2562487 (25 bp)
AATCCATTTGCTTCTTTGTGGTCTT
LOC_Os03g05320
Os.14245.1.S1_s_at--451--8671Chr03:2562479..2562503 (25 bp)
TGTGGTCTTTGCCTGAAGATGTTCT
LOC_Os03g05320
Os.14245.1.S1_s_at--687--8571Chr03:2562514..2562538 (25 bp)
TGGATTTGTGCCATGCGACCAGTCA
LOC_Os03g05320
Target Sequence 
GAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGTTACAATTGATATACCATTTCCATTTCGAGCAT
TACCTGTTGAAGCCATTGAATCAAGTGGCAAGCAAGTTCTTGAGCAACTACTCCGAGTCATGCTTCCACGATTTTTGAAG
CAGCTTGTTAAAGACTACCAAGCATGGGCTTCGGGTGATTCTTCAAGGAAACCACTTGGCACTGGTGAAATATGAAGCTT
CGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATA
CGTCGTTTTGCTCACAAAATCCATTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCC
ATGCGACCAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14245.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis