Browse Element(s) Details


Os.14340.1.S1_at

Description gb:CF328858
DB_XREF= gi:33805958
DB_XREF=NACL--03-P10.g1
CLONE=NACL--03-P10
TID=Os.14340.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.14340 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_055885.1 (H.sapiens) KIAA0853 protein (Homo sapiens)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4307511/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42999NANA10+22839762..22846039retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g43020Os.46995.1.S1_x_at1/1110+22850109..22852221retrotransposon protein, putative, unclassified
LOC_Os10g43030OsAffx.18612.1.S1_x_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43030OsAffx.18612.1.S1_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43040Os.5240.1.S1_at11/1110+22856728..22859861Ankyrin-2, putative, expressed
LOC_Os10g43050Os.2978.1.S1_at10/1110+22860459..22862600ATP-dependent Clp protease proteolytic subunit 3, putative, expressed
LOC_Os10g43060Os.51442.1.S1_at11/1110+22862780..22865397expressed protein
LOC_Os10g43060Os.6581.1.S1_at8/1110+22862780..22865397expressed protein
LOC_Os10g43075Os.14340.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_x_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075OsAffx.17372.1.S1_at1/1110+22866052..22876353NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14340.1.S1_at--84--7752Chr04:7918419..7918443 (25 bp)
GGTGGGTCTGCGACAAGATCATTTT
NONE
Os.14340.1.S1_at--538--2812Chr04:7918433..7918457 (25 bp)
AAGATCATTTTCAGGCAACCTTCCC
NONE
Os.14340.1.S1_at--926--3092Chr04:7918460..7918484 (25 bp)
AATACTGCAGCAACCTCGAGAGCGT
NONE
Os.14340.1.S1_at--127--5792Chr04:7918494..7918518 (25 bp)
GACGAGCGTACTAGCACAGGAGGAA
NONE
Os.14340.1.S1_at--370--6032Chr04:7918567..7918591 (25 bp)
GAGATCCAGAATCAGCGGCGGCTTT
NONE
Os.14340.1.S1_at--47--2712Chr04:7918713..7918737 (25 bp)
AAGCATTCTTGAGCAGGTTGTGGTC
NONE
Os.14340.1.S1_at--813--3172Chr04:7918739..7918763 (25 bp)
AATTGGCTGCCAGTACGAACGAACT
NONE
Os.14340.1.S1_at--661--6552Chr04:7918769..7918793 (25 bp)
GATTATCTCCTGGTTGCCCTGTACT
NONE
Os.14340.1.S1_at--574--4272Chr04:7918786..7918810 (25 bp)
CCTGTACTGTACTTTTCTCTATTAT
NONE
Os.14340.1.S1_at--892--2431Chr10:22866144..22866168 (25 bp)
AAAATGGCTGTTTCGATCGGTGGCT
LOC_Os10g43075
Os.14340.1.S1_at--840--512Chr04:7918876..7918900 (25 bp)
ATCGCTCGTTTTCTTCACGGATATT
NONE
Target Sequence 
GGTGGGTCTGCGACAAGATCATTTTCAGGCAACCTTCCCNACAATACTGCAGCAACCTCGAGAGCGTACTACGAGTGACG
AGCGTACTAGCACAGGAGGAAATTATTATGAGGAGAATGCTGAGGGAAGTGGTGACGCCAGCAGCGTCGGAGATCCAGAA
TCAGCGGCGGCTTTGGAANGCTGGCACGAGGCATGGCCCACGGGGGGNCAGCAAGTCGTCGTCCTCAAGCTCAAGGCAGG
TTGTAGTAGAACGCAGGGAGCGTCGAGAAGGGAAATGGGAGAGGAAGCATTCTTGAGCAGGTTGTGGTCAAATTGGCTGC
CAGTACGAACGAACTGTATCGATTATCTCCTGGTTGCCCTGTACTGTACTTTTCTCTATTATGTATGTGTACGCAGAGCG
GCTAATGAAAATGGCTGTTTCGATCGGTGGCTTCGGTGTTCTTTTTCATCGCTCGTTTTCTTCACGGATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis