Browse Element(s) Details


Os.14374.1.S1_at

Description gb:BI805926
DB_XREF= gi:15853130
DB_XREF=S051D08
CLONE=S051D08
TID=Os.14374.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.14374 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187122.1 (A.thaliana) ankyrin-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0368011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03640NANA9+1825425..1826113hypothetical protein
LOC_Os09g03650OsAffx.576.1.S1_at4/119+1831098..1837967transposon protein, putative, unclassified
LOC_Os09g03650OsAffx.10530.1.S1_at1/119+1831098..1837967transposon protein, putative, unclassified
LOC_Os09g03660NANA9+1838844..1841929retrotransposon protein, putative, unclassified
LOC_Os09g03670OsAffx.17554.1.S1_at11/119+1844736..1845422hypothetical protein
LOC_Os09g03680Os.14374.1.S1_at11/119+1849573..1858251TPR Domain containing protein, expressed
LOC_Os09g03680OsAffx.6162.1.S1_s_at11/119+1849573..1858251TPR Domain containing protein, expressed
LOC_Os09g03690Os.49437.1.S1_at10/119+1860957..1863180Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g03700Os.31312.2.S1_x_at2/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03700Os.31312.5.S1_x_at2/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03700Os.28943.1.S1_x_at1/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03710OsAffx.22492.1.S1_x_at1/119+1868998..1874215retrotransposon protein, putative, unclassified
LOC_Os09g03710OsAffx.22492.1.S1_at1/119+1868998..1874215retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009860biological_processpollen tube growth
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14374.1.S1_at--46--8671Chr09:1849761..1849785 (25 bp)
TGTGGAAGTCGTCGTGCCTCCTGAA
LOC_Os09g03680
Os.14374.1.S1_at--247--7291Chr09:1849748..1849772 (25 bp)
GTGCCTCCTGAACACCATCAGTTTT
LOC_Os09g03680
Os.14374.1.S1_at--759--2451Chr09:1849713..1849737 (25 bp)
AACAATTCATTTGCTGCTTCTTGGC
LOC_Os09g03680
Os.14374.1.S1_at--1146--9591Chr09:1849707..1849731 (25 bp)
TCATTTGCTGCTTCTTGGCTTGTAA
LOC_Os09g03680
Os.14374.1.S1_at--439--10711Chr09:1849703..1849727 (25 bp)
TTGCTGCTTCTTGGCTTGTAAGCTG
LOC_Os09g03680
Os.14374.1.S1_at--1019--8271Chr09:1849691..1849715 (25 bp)
GGCTTGTAAGCTGCGTTGAGAATCT
LOC_Os09g03680
Os.14374.1.S1_at--713--4771Chr09:1849682..1849706 (25 bp)
GCTGCGTTGAGAATCTAGGATGCGT
LOC_Os09g03680
Os.14374.1.S1_at--575--3431Chr09:1849668..1849692 (25 bp)
CTAGGATGCGTTTTAAATAGCTAAT
LOC_Os09g03680
Os.14374.1.S1_at--169--3151Chr09:1849646..1849670 (25 bp)
AATTAAGCTTATAGCTACTTCTCGT
LOC_Os09g03680
Os.14374.1.S1_at--960--10352Chr02:35584684..35584816 (25 bp)
TTTTTTAGCATGTTTTTCAAATTGA
NONE
Os.14374.1.S1_at--660--3171Chr09:1849600..1849625 (25 bp)
AATTGATAAATGTGTGTTCCGTAAA
LOC_Os09g03680
Target Sequence 
TGTGGAAGTCGTCGTGCCTCCTGAACACCATCAGTTTTCTTTTCTTCCAACAATTCATTTGCTGCTTCTTGGCTTGTAAG
CTGCGTTGAGAATCTAGGATGCGTTTTAAATAGCTAATTAAGCTTATAGCTACTTCTCGTTTTTTTAGCATGTTTTTCAA
ATTGATAAATGTGTGTTCCGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis