Browse Element(s) Details


Os.14491.1.S1_a_at

Description gb:AK065565.1
DB_XREF= gi:32975583
TID=Os.14491.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14491 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031B09, full insert sequence.
FL= gb:AK065565.1 gb:AK061886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2638011/11nucellin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26340Os.52633.1.S1_at5/114+15334222..15340129retrotransposon protein, putative, unclassified
LOC_Os04g26340Os.1189.1.S1_at1/114+15334222..15340129retrotransposon protein, putative, unclassified
LOC_Os04g26350OsAffx.13983.1.S1_at11/114+15347013..15350392Leucine Rich Repeat family protein
LOC_Os04g26360Os.14491.2.S1_x_at11/114+15356194..15358674transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26360Os.47463.1.S1_x_at4/114+15356194..15358674transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26370NANA4+15360118..15362154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26380Os.14491.1.S1_a_at11/114+15363469..15364393nucellin, putative, expressed
LOC_Os04g26400OsAffx.24383.1.S1_at3/114+15364819..15374138expressed protein
LOC_Os04g26400OsAffx.29882.1.S1_x_at1/114+15364819..15374138expressed protein
LOC_Os04g26400OsAffx.19840.1.S1_at1/114+15364819..15374138expressed protein
LOC_Os04g26400Os.26891.1.A1_x_at1/114+15364819..15374138expressed protein
LOC_Os04g26410Os.47463.1.S1_x_at6/114+15375771..15377972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26410Os.14491.2.S1_x_at4/114+15375771..15377972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26420NANA4+15378434..15380809transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26430NANA4+15382509..15385604transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14491.1.S1_a_at--35--5191Chr04:15364034..15364058 (25 bp)
GCAATGGAATACTATGTGCAGGTGG
LOC_Os04g26380
Os.14491.1.S1_a_at--989--5091Chr04:15363745..15363769 (25 bp)
GCACTTCGCCCGATAGGGATGTGCA
LOC_Os04g26380
Os.14491.1.S1_a_at--1077--791Chr04:15363670..15363694 (25 bp)
ATGGTGGATCAACAATAGGCGCCTT
LOC_Os04g26380
Os.14491.1.S1_a_at--856--7951Chr04:15363665..15363689 (25 bp)
GGATCAACAATAGGCGCCTTTGTCA
LOC_Os04g26380
Os.14491.1.S1_a_at--573--6431Chr04:15363638..15363662 (25 bp)
GATCTTGTGCACTATAATCAACTCT
LOC_Os04g26380
Os.14491.1.S1_a_at--242--7351Chr04:15363632..15363656 (25 bp)
GTGCACTATAATCAACTCTCTGGGA
LOC_Os04g26380
Os.14491.1.S1_a_at--244--3271Chr04:15363620..15363644 (25 bp)
CAACTCTCTGGGAATGGGCTGACTC
LOC_Os04g26380
Os.14491.1.S1_a_at--321--3771Chr04:15363617..15363641 (25 bp)
CTCTCTGGGAATGGGCTGACTCAAT
LOC_Os04g26380
Os.14491.1.S1_a_at--162--5291Chr04:15363609..15363633 (25 bp)
GAATGGGCTGACTCAATCAACTAAC
LOC_Os04g26380
Os.14491.1.S1_a_at--644--8951Chr04:15363601..15363625 (25 bp)
TGACTCAATCAACTAACACCAGCCT
LOC_Os04g26380
Os.14491.1.S1_a_at--119--3091Chr04:15363595..15363619 (25 bp)
AATCAACTAACACCAGCCTCACATT
LOC_Os04g26380
Target Sequence 
GCAATGGAATACTATGTGCAGGTGGNCNCTGGCAGCAGTGCATTTTGGGTTANCTGCATCCCNTGCAAGCAATGCCCTNG
CAAGAGNGATATATTGAAAAAGNTGACATTATATGACCCTAGGAGNTCANTAAGTTAAAAAGTGGNGAAATGTGATGNTA
TGTTNTGCACTTCGCCCGATAGGGATGTGCANCCAGAATGCAACNCAAGCTNNCTTTGTCCATTCATNGCGACNTATGNT
GATGGTGGATCAACAATAGGCGCCTTTGTCANTGATCTTGTGCACTATAATCAACTCTCTGGGAATGGGCTGACTCAATC
AACTAACACCAGCCTCACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14491.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis