Browse Element(s) Details


OsAffx.29882.1.S1_x_at

Description tigr:9637.m01439
TID=OsAffx.29882.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g264001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26340Os.52633.1.S1_at5/114+15334222..15340129retrotransposon protein, putative, unclassified
LOC_Os04g26340Os.1189.1.S1_at1/114+15334222..15340129retrotransposon protein, putative, unclassified
LOC_Os04g26350OsAffx.13983.1.S1_at11/114+15347013..15350392Leucine Rich Repeat family protein
LOC_Os04g26360Os.14491.2.S1_x_at11/114+15356194..15358674transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26360Os.47463.1.S1_x_at4/114+15356194..15358674transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26370NANA4+15360118..15362154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26380Os.14491.1.S1_a_at11/114+15363469..15364393nucellin, putative, expressed
LOC_Os04g26400OsAffx.24383.1.S1_at3/114+15364819..15374138expressed protein
LOC_Os04g26400OsAffx.29882.1.S1_x_at1/114+15364819..15374138expressed protein
LOC_Os04g26400OsAffx.19840.1.S1_at1/114+15364819..15374138expressed protein
LOC_Os04g26400Os.26891.1.A1_x_at1/114+15364819..15374138expressed protein
LOC_Os04g26410Os.47463.1.S1_x_at6/114+15375771..15377972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26410Os.14491.2.S1_x_at4/114+15375771..15377972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26420NANA4+15378434..15380809transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26430NANA4+15382509..15385604transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29882.1.S1_x_at--140--771Chr09:10396948..10396972 (25 bp)
ATGTCGTCGAGTCGCCGCGGCTTCC
NONE
OsAffx.29882.1.S1_x_at--758--731Chr09:10396982..10397006 (25 bp)
ATGTCCGCGCCTGCCGAAGTTATGG
NONE
OsAffx.29882.1.S1_x_at--673--4151Chr09:10396987..10397011 (25 bp)
CGCGCCTGCCGAAGTTATGGCATGT
NONE
OsAffx.29882.1.S1_x_at--79--1211Chr09:10396999..10397023 (25 bp)
AGTTATGGCATGTCGGTGCGAGCCT
NONE
OsAffx.29882.1.S1_x_at--275--9071Chr09:10397036..10397060 (25 bp)
TGCTTCATACGCCAGCGACGACGTA
NONE
OsAffx.29882.1.S1_x_at--526--4432Chr09:10397074..10397098 (25 bp)
GCCATGTCCATGCAGGCTGCCGCTG
NONE
OsAffx.29882.1.S1_x_at--518--9171Chr09:10397091..10397344 (25 bp)
TGCCGCTGCAGTTCGTATCCATCAG
NONE
OsAffx.29882.1.S1_x_at--635--6711Chr09:10397330..10397354 (25 bp)
GTTCGTATCCATCAGCCAAGCTAAT
NONE
OsAffx.29882.1.S1_x_at--1057--3152Chr09:10397352..10397376 (25 bp)
AATTGCCTGGCTGAATCATATGGAT
NONE
OsAffx.29882.1.S1_x_at--424--411Chr09:10397366..10397390 (25 bp)
ATCATATGGATGGACTAAGACACAG
NONE
OsAffx.29882.1.S1_x_at--893--6211Chr09:10397374..10397397 (24 bp)
GATGGACTAAGACACAGAAACATGT
NONE
Target Sequence 
ATGTCGTCGAGTCGCCGCGGCTTCCGCCGCTGCCATGTCCGCGCCTGCCGAAGTTATGGCATGTCGGTGCGAGCCTTGGG
GGCGCCGCTGCTTCATACGCCAGCGACGACGTACGCCGACAACACGGCCATGTCCATGCAGGCTGCCGCTGCAGTTCGTA
TCCATCAGCCAAGCTAATTGCCTGGCTGAATCATATGGATGGACTAAGACACAGAAACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29882.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis