Browse Element(s) Details

Description

gb:AK064533.1
DB_XREF= gi:32974551
TID=Os.14676.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTP-binding protein (OJ1567_G09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-H06, full insert sequence.
FL= gb:AK064533.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g09570	11/11	nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01920	11/11	nucleolar GTP-binding protein 1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g09540	Os.34575.1.S1_at	10/11	6	+	4843552..4853691	SAC domain protein 3, putative, expressed
LOC_Os06g09550	OsAffx.27538.1.S1_at	11/11	6	+	4861981..4862639	hypothetical protein
LOC_Os06g09560	Os.5817.1.S1_at	11/11	6	+	4866844..4869145	DnaJ domain containing protein, expressed
LOC_Os06g09570	Os.14676.2.S1_at	11/11	6	+	4869882..4873712	nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09570	Os.14676.1.S1_a_at	11/11	6	+	4869882..4873712	nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09580	Os.35344.3.S1_x_at	9/11	6	+	4874079..4876893	Transposable element protein, putative, MuDR
LOC_Os06g09580	OsAffx.22940.5.S1_at	7/11	6	+	4874079..4876893	Transposable element protein, putative, MuDR
LOC_Os06g09580	Os.35344.18.S1_x_at	6/11	6	+	4874079..4876893	Transposable element protein, putative, MuDR
LOC_Os06g09580	OsAffx.22940.5.S1_x_at	5/11	6	+	4874079..4876893	Transposable element protein, putative, MuDR
LOC_Os06g09600	OsAffx.27536.1.S1_x_at	11/11	6	+	4884948..4885654	expressed protein
LOC_Os06g09610	Os.22674.1.S1_at	10/11	6	+	4887550..4889730	AhpC/TSA family protein, expressed
LOC_Os06g09620	OsAffx.27533.1.S1_at	11/11	6	+	4891310..4894722	expressed protein
LOC_Os06g09630	Os.7644.1.S1_at	11/11	6	+	4896181..4899565	3-oxoacyl-synthase I, chloroplast precursor, putative, expressed

Gene Ontology Classification

GO id	Type	Name
GO:0000166	molecular_function	nucleotide binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.14676.1.S1_a_at--833--403	2	Chr07:558336..558360 (25 bp)	CGTTGTCGAGGTCCAGGTCTAGGTC	LOC_Os07g01920
Os.14676.1.S1_a_at--215--225	2	Chr07:558310..558334 (25 bp)	AAATCAAGACCACCTGAGGAGGTTG	LOC_Os07g01920
Os.14676.1.S1_a_at--1029--171	2	Chr07:558302..558326 (25 bp)	ACCACCTGAGGAGGTTGTTCCAGGA	LOC_Os07g01920
Os.14676.1.S1_a_at--791--921	2	Chr07:558284..558308 (25 bp)	TCCAGGAGAAGGATTCAAGGACTCT	LOC_Os07g01920
Os.14676.1.S1_a_at--456--531	2	Chr07:558277..558301 (25 bp)	GAAGGATTCAAGGACTCTGCTCAGA	LOC_Os07g01920
Os.14676.1.S1_a_at--731--793	2	Chr07:558274..558298 (25 bp)	GGATTCAAGGACTCTGCTCAGAAGA	LOC_Os07g01920
Os.14676.1.S1_a_at--114--13	2	Chr07:558272..558296 (25 bp)	ATTCAAGGACTCTGCTCAGAAGAAG	LOC_Os07g01920
Os.14676.1.S1_a_at--444--321	2	Chr07:558269..558293 (25 bp)	CAAGGACTCTGCTCAGAAGAAGAAG	LOC_Os07g01920
Os.14676.1.S1_a_at--729--555	2	Chr07:558236..558260 (25 bp)	GAAAGCTAAGGATTCTGTGAGGAAC	LOC_Os07g01920
Os.14676.1.S1_a_at--457--291	2	Chr07:558229..558253 (25 bp)	AAGGATTCTGTGAGGAACAGGAACA	LOC_Os07g01920
Os.14676.1.S1_a_at--104--249	2	Chr07:558214..558238 (25 bp)	AACAGGAACAAGGAGGCTCGTCGCG	LOC_Os07g01920

Target Sequence

CGTTGTCGAGGTCCAGGTCTAGGTCGAAATCAAGACCACCTGAGGAGGTTGTTCCAGGAGAAGGATTCAAGGACTCTGCT
CAGAAGAAGAAGGCAATTAAGAAAGCTAAGGATTCTGTGAGGAACAGGAACAAGGAGGCTCGTCGCG

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project: