Browse Element(s) Details


Os.14676.2.S1_at

Description gb:AK060430.1
DB_XREF= gi:32970448
TID=Os.14676.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTP-binding protein (OJ1567_G09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-A10, full insert sequence.
FL= gb:AK060430.1 gb:AK101986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0957011/11nucleolar GTP-binding protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09540Os.34575.1.S1_at10/116+4843552..4853691SAC domain protein 3, putative, expressed
LOC_Os06g09550OsAffx.27538.1.S1_at11/116+4861981..4862639hypothetical protein
LOC_Os06g09560Os.5817.1.S1_at11/116+4866844..4869145DnaJ domain containing protein, expressed
LOC_Os06g09570Os.14676.2.S1_at11/116+4869882..4873712nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09570Os.14676.1.S1_a_at11/116+4869882..4873712nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09580Os.35344.3.S1_x_at9/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580OsAffx.22940.5.S1_at7/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580Os.35344.18.S1_x_at6/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580OsAffx.22940.5.S1_x_at5/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09600OsAffx.27536.1.S1_x_at11/116+4884948..4885654expressed protein
LOC_Os06g09610Os.22674.1.S1_at10/116+4887550..4889730AhpC/TSA family protein, expressed
LOC_Os06g09620OsAffx.27533.1.S1_at11/116+4891310..4894722expressed protein
LOC_Os06g09630Os.7644.1.S1_at11/116+4896181..48995653-oxoacyl-synthase I, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14676.2.S1_at--818--111Chr06:4870376..4870400 (25 bp)
ATTCTCTGGAAAACGTTCTATTGGC
LOC_Os06g09570
Os.14676.2.S1_at--377--9111Chr06:4870321..4870345 (25 bp)
TGCTGCTTAGCATCACTGGTTTCAG
LOC_Os06g09570
Os.14676.2.S1_at--29--8211Chr06:4870162..4870186 (25 bp)
GGAAGGCCTGTTTATCCAATCTTTA
LOC_Os06g09570
Os.14676.2.S1_at--424--3011Chr06:4870145..4870169 (25 bp)
AATCTTTAGGACTTGTTCTACGCCG
LOC_Os06g09570
Os.14676.2.S1_at--748--10571Chr06:4870130..4870154 (25 bp)
TTCTACGCCGTTATTCATACTGTCT
LOC_Os06g09570
Os.14676.2.S1_at--597--31Chr06:4870100..4870124 (25 bp)
ATTGGTGTTGTATCGCGTCTCATCC
LOC_Os06g09570
Os.14676.2.S1_at--728--4891Chr06:4870051..4870075 (25 bp)
GCTTATGTTTCAGCTTTATGCTACA
LOC_Os06g09570
Os.14676.2.S1_at--791--3111Chr06:4869990..4870014 (25 bp)
AATTTCGTCGAATGGTACTCACTAC
LOC_Os06g09570
Os.14676.2.S1_at--555--7011Chr06:4869976..4870000 (25 bp)
GTACTCACTACCATCAATATCTTAT
LOC_Os06g09570
Os.14676.2.S1_at--493--211Chr06:4869930..4869954 (25 bp)
ATATTCCAGTCCTGTTCTACTGTAC
LOC_Os06g09570
Os.14676.2.S1_at--370--1971Chr06:4869912..4869936 (25 bp)
ACTGTACCGATGCTCTACTGTTTGA
LOC_Os06g09570
Target Sequence 
ATTCTCTGGAAAACGTTCTATTGGCAAGACGAGCAGGCGATAAGTAATTCAGCACTGCTGCTTAGCATCACTGGTTTCAG
GAAGAGCAGTATAATTGCAGTTCGGTGTTGGGATTAGGGTGAAGGAAGGCCTGTTTATCCAATCTTTAGGACTTGTTCTA
CGCCGTTATTCATACTGTCTGGTGGATTGGTGTTGTATCGCGTCTCATCCTTCGACTGAGACATAATTTTGTTAGCTTAT
GTTTCAGCTTTATGCTACATTATATATGGTTTGGCTAGTATTAATAGAGTGGTTTAATTTCGTCGAATGGTACTCACTAC
CATCAATATCTTATAATTGTGACTTTGTTATACTTATATTCCAGTCCTGTTCTACTGTACCGATGCTCTACTGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14676.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis