Browse Element(s) Details


Os.14693.1.S1_at

Description gb:AK103791.1
DB_XREF= gi:32989000
TID=Os.14693.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033145L18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033145L18, full insert sequence.
FL= gb:AK102688.1 gb:AK103791.1 gb:AK103029.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1379011/11myb family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13750Os.10466.1.S1_at10/113+7425053..7428664expressed protein
LOC_Os03g13750OsAffx.12845.1.S1_at9/113+7425053..7428664expressed protein
LOC_Os03g13760Os.18639.1.S1_at11/113+7428850..7432091Small nuclear ribonucleoprotein Sm D3, putative, expressed
LOC_Os03g13770Os.27347.1.S1_a_at11/113+7432674..7436825expressed protein
LOC_Os03g13780Os.35344.18.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780Os.35344.3.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780OsAffx.22940.5.S1_x_at3/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13790Os.14693.1.S2_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13790Os.14693.1.S1_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13800Os.12755.2.S1_s_at10/113+7455335..7457261NHP2-like protein 1, putative, expressed
LOC_Os03g13810Os.13497.1.S2_at11/113+7459432..7462341expressed protein
LOC_Os03g13810Os.13497.1.S1_at11/113+7459432..7462341expressed protein
LOC_Os03g13820Os.10079.1.S1_at11/113+7462397..7466601protein kinase family protein, putative, expressed
LOC_Os03g13830OsAffx.3232.1.S1_at11/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.2.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.1.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13840Os.7862.1.S1_at11/113+7479210..7482984Senescence-associated protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14693.1.S1_at--265--471Chr03:7452985..7453009 (25 bp)
ATCTCCCTTAGAGGCTTGTGTGCAA
LOC_Os03g13790
Os.14693.1.S1_at--265--9751Chr03:7453018..7453042 (25 bp)
TAATTCGCTCAGTAGTTGTGCTCCT
LOC_Os03g13790
Os.14693.1.S1_at--145--8911Chr03:7453042..7453066 (25 bp)
TGAGCAACACCCTTGTGGTTCGAAA
LOC_Os03g13790
Os.14693.1.S1_at--708--8771Chr03:7453083..7453107 (25 bp)
TGTTTGCTATGCCATCTAGTACAGG
LOC_Os03g13790
Os.14693.1.S1_at--819--5931Chr03:7453127..7453151 (25 bp)
GAGCAGTGCATTGATGTTCTCCCCT
LOC_Os03g13790
Os.14693.1.S1_at--473--4211Chr03:7453147..7453171 (25 bp)
CCCCTCACAGTTTGGCAGGCAGAAT
LOC_Os03g13790
Os.14693.1.S1_at--7--51Chr03:7453398..7453422 (25 bp)
ATTGTCCAGGGACATCTGTTGTCAA
LOC_Os03g13790
Os.14693.1.S1_at--831--4811Chr03:7453478..7453502 (25 bp)
GCTCTTCATGCTTCTCGTTATAAAT
LOC_Os03g13790
Os.14693.1.S1_at--678--5791Chr03:7453562..7453586 (25 bp)
GACGCATTCAGTTTTAACCTACCAG
LOC_Os03g13790
Os.14693.1.S1_at--1093--3071Chr03:7453610..7453634 (25 bp)
AATAATTCAGCTAGCAGCTCTCCCG
LOC_Os03g13790
Os.14693.1.S1_at--1071--3391Chr03:7453624..7453648 (25 bp)
CAGCTCTCCCGATAGTGACAGTGAT
LOC_Os03g13790
Target Sequence 
ATCTCCCTTAGAGGCTTGTGTGCAAAAGGATGGTAATTCGCTCAGTAGTTGTGCTCCTGAGCAACACCCTTGTGGTTCGA
AAGATCAGTCAGCATTATTGTTTGCTATGCCATCTAGTACAGGCAAGAGTGCTCAGGTGCCAGAGCAGTGCATTGATGTT
CTCCCCTCACAGTTTGGCAGGCAGAATCAAGACCAAGTTACCACGAACCAAGTTTTTGAGGTTGATCAAGGGATGGATTG
TGCTGCAGTATCTGAAGGAGAGTGGGCAGATACCCTTACTGATATCAGTGTTGGATACTTACTGACAGAAGCTTCCAGAG
GTGCTAATACTGATTGTCCAGGGACATCTGTTGTCAAAAACACACTGTTGCTTGAGAATCCCTGCAGCTATGATTCATTT
GATGCTGCTGTTGCTCTTCATGCTTCTCGTTATAAATCAGCAGAGCAGCCAGCCCTTGCATCCCATTCAACCATCTGGGG
TGCTGAAGAAACCTGTGACGCATTCAGTTTTAACCTACCAGCATCTAGGAAGCGAGAAGGTTCAAATAATTCAGCTAGCA
GCTCTCCCGATAGTGACAGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis